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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12366-RA through 18771 annotations produced 1 hits



neurotic (O-fut1):

Annotation Number : CG12366
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033901
Gbrowse : chr2R:10048939-10050326 (+) // 100.0 //
Probeset : 1631674_at
Accessions : protein= NP_610931;, nucleotide= NM_137087;
Pathway : 0005737 // cytoplasm // inferred by curator /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 00057
Interpro : "0005112 // Notch binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interac
FlyMine data for FBgn0033901.
BDGP gene expression has embryonic in situ data for O-fut1: 14 pix of staining in 4 body parts.
BioGrid reports that CG12366 interacts with CG12901 CG9784 CG9986 CG33094 .
TRiP has 1 RNAi stocks for FBgn0033901 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 14 of 4 0.50Down
Head75 ± 44 of 4 0.50Down
Eye212 ± 84 of 4 1.49Up
Thoracicoabdominal ganglion84 ± 54 of 4 0.60Down
Salivary gland29 ± 63 of 4 0.20Down
Crop49 ± 24 of 4 0.30Down
Midgut18 ± 04 of 4 0.10Down
Tubule14 ± 23 of 4 0.10Down
Hindgut33 ± 24 of 4 0.20Down
Heart93 ± 44 of 4 0.65Down
Fat body31 ± 34 of 4 0.22Down
Ovary222 ± 44 of 4 1.60Up
Testis9 ± 04 of 4 0.10Down
Male accessory glands29 ± 24 of 4 0.20Down
Virgin spermatheca21 ± 14 of 4 0.15Down
Mated spermatheca26 ± 14 of 4 0.19Down
Adult carcass43 ± 34 of 4 0.30Down
Larval CNS288 ± 334 of 4 2.03Up
Larval Salivary gland65 ± 54 of 4 0.46Down
Larval midgut17 ± 24 of 4 0.13Down
Larval tubule11 ± 14 of 4 0.10Down
Larval hindgut64 ± 24 of 4 0.45Down
Larval fat body40 ± 54 of 4 0.30Down
Larval trachea369 ± 214 of 4 2.59Up
Larval carcass155 ± 64 of 4 1.09None
S2 cells (growing)1018 ± 424 of 4 7.14Up
Whole fly142 ± 124 of 4

Looking for CG12366-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime