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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12367-RA through 18771 annotations produced 1 hits



CG12367 (Hen1):

Annotation Number : CG12367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033686
Gbrowse : chr2R:8033230-8040259 (+) // 100.0 //
Probeset : 1623887_at
Accessions : protein= NP_610732;, nucleotide= NM_136888;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008171 // O-methyltransferase activity
FlyMine data for FBgn0033686.
BDGP gene expression has embryonic in situ data for CG12367: 8 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0033686 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033686 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 14 of 4 0.40Down
Head32 ± 04 of 4 0.50Down
Eye30 ± 24 of 4 0.43Down
Thoracicoabdominal ganglion23 ± 14 of 4 0.30Down
Salivary gland44 ± 44 of 4 0.63Down
Crop52 ± 44 of 4 0.70Down
Midgut20 ± 14 of 4 0.30Down
Tubule45 ± 24 of 4 0.60Down
Hindgut33 ± 04 of 4 0.50Down
Heart54 ± 44 of 4 0.77Down
Fat body56 ± 64 of 4 0.80Down
Ovary99 ± 14 of 4 1.40Up
Testis177 ± 64 of 4 2.50Up
Male accessory glands95 ± 54 of 4 1.40Up
Virgin spermatheca35 ± 34 of 4 0.50Down
Mated spermatheca49 ± 44 of 4 0.70Down
Adult carcass34 ± 14 of 4 0.50Down
Larval CNS68 ± 84 of 4 0.97None
Larval Salivary gland48 ± 64 of 4 0.69Down
Larval midgut12 ± 14 of 4 0.18Down
Larval tubule43 ± 14 of 4 0.60Down
Larval hindgut61 ± 34 of 4 0.86Down
Larval fat body52 ± 84 of 4 0.70None
Larval trachea83 ± 134 of 4 1.18None
Larval carcass39 ± 34 of 4 0.55Down
S2 cells (growing)120 ± 24 of 4 1.70Up
Whole fly70 ± 24 of 4

Looking for CG12367-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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