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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12370-RA through 18771 annotations produced 2 hits



(CG12370):

Annotation Number : CG12370
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033744
Gbrowse : chr2R:8371861-8373592 (+) // 100.0 //
Probeset : 1631164_a_at
Accessions : protein= NP_610789; /// NP_725175;, nucleotide= NM_136945; /// NM_165907;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0033744.
Homophila reports that CG12370 is a close match (3e-20) to human gene GHRHR (NP_001009824), a gene associated with Growth hormone deficient dwarfism (3).
TRiP has 1 RNAi stocks for FBgn0033744 available for purchase.
VDRC has 4 RNAi stocks for FBgn0033744 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 44 of 4 6.10Up
Head47 64 of 4 2.10Up
Eye18 24 of 4 0.81None
Thoracicoabdominal ganglion100 54 of 4 4.50Up
Salivary gland9 20 of 4 0.40Down
Crop209 114 of 4 9.40Up
Midgut110 34 of 4 5.00Up
Tubule410 144 of 418.50Up
Hindgut121 44 of 4 5.50Up
Heart42 34 of 4 1.93Up
Fat body14 24 of 4 0.63Down
Ovary2 10 of 4 0.10Down
Testis5 00 of 4 0.20Down
Male accessory glands10 11 of 4 0.50Down
Virgin spermatheca11 13 of 4 0.54Down
Mated spermatheca11 14 of 4 0.50Down
Adult carcass12 10 of 4 0.60Down
Larval CNS77 54 of 4 3.46Up
Larval Salivary gland2 10 of 4 0.12Down
Larval midgut33 14 of 4 1.52Up
Larval tubule371 74 of 416.70Up
Larval hindgut140 64 of 4 6.32Up
Larval fat body72 64 of 4 3.20Up
Larval trachea8 33 of 4 0.38Down
Larval carcass15 14 of 4 0.71Down
S2 cells (growing)4 00 of 4 0.19Down
Whole fly22 14 of 4



(CG12370):

Annotation Number : CG12370
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033744
Gbrowse : chr2R:8371861-8373592 (+) // 100.0 //
Probeset : 1639961_at
Accessions : protein= NP_610789; /// NP_725175;, nucleotide= NM_136945; /// NM_165907;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0033744.
Homophila reports that CG12370 is a close match (3e-20) to human gene GHRHR (NP_001009824), a gene associated with Growth hormone deficient dwarfism (3).
TRiP has 1 RNAi stocks for FBgn0033744 available for purchase.
VDRC has 4 RNAi stocks for FBgn0033744 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 24 of 4 7.80Up
Head16 33 of 4 2.70None
Eye8 12 of 4 1.40None
Thoracicoabdominal ganglion36 24 of 4 5.90Up
Salivary gland8 20 of 4 1.40None
Crop56 24 of 4 9.30Up
Midgut20 22 of 4 3.40Up
Tubule120 34 of 419.70Up
Hindgut49 34 of 4 8.00Up
Heart19 23 of 4 3.22Up
Fat body2 20 of 4 0.42None
Ovary1 00 of 4 0.20Down
Testis1 00 of 4 0.20Down
Male accessory glands0 00 of 4 0.10Down
Virgin spermatheca5 20 of 4 0.82None
Mated spermatheca6 10 of 4 1.11None
Adult carcass4 20 of 4 0.80None
Larval CNS25 44 of 4 4.11Up
Larval Salivary gland0 00 of 4 0.13Down
Larval midgut12 10 of 4 2.02Up
Larval tubule111 64 of 418.10Up
Larval hindgut64 24 of 410.42Up
Larval fat body27 33 of 4 4.50Up
Larval trachea3 20 of 4 0.53None
Larval carcass7 20 of 4 1.27None
S2 cells (growing)0 00 of 4 0.16Down
Whole fly6 10 of 4

Looking for CG12370-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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