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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12385-RA through 18771 annotations produced 1 hits


thetaTrypsin (thetaTry):

Annotation Number : CG12385
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011555
Gbrowse : chr2R:7228995-7230261 (-) // 100.0 //
Probeset : 1623165_at
Accessions : protein= NP_523693;, nucleotide= NM_078969;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0011555.
BDGP gene expression has embryonic in situ data for thetaTry: 4 pix of staining in 1 body parts.
Homophila reports that CG12385 is a close match (8e-11) to human gene MASP2 (NP_006601), a gene associated with MASP2 deficiency (3).
VDRC has 2 RNAi stocks for FBgn0011555 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 02 of 4 0.00Down
Head6 ± 10 of 4 0.00Down
Eye7 ± 21 of 4 0.01Down
Thoracicoabdominal ganglion9 ± 02 of 4 0.00Down
Salivary gland21 ± 42 of 4 0.02Down
Crop6 ± 21 of 4 0.00Down
Midgut4479 ± 1404 of 4 4.60Up
Tubule9 ± 10 of 4 0.00Down
Hindgut9 ± 12 of 4 0.00Down
Heart6 ± 11 of 4 0.01Down
Fat body6 ± 20 of 4 0.01Down
Ovary5 ± 02 of 4 0.00Down
Testis4 ± 11 of 4 0.00Down
Male accessory glands15 ± 02 of 4 0.00Down
Virgin spermatheca7 ± 12 of 4 0.01Down
Mated spermatheca10 ± 13 of 4 0.01Down
Adult carcass21 ± 24 of 4 0.00Down
Larval CNS4 ± 20 of 4 0.00Down
Larval Salivary gland10 ± 11 of 4 0.01Down
Larval midgut4250 ± 1624 of 4 4.40Up
Larval tubule8 ± 10 of 4 0.00Down
Larval hindgut7 ± 11 of 4 0.01Down
Larval fat body8 ± 11 of 4 0.00Down
Larval trachea7 ± 21 of 4 0.01Down
Larval carcass4 ± 20 of 4 0.00Down
S2 cells (growing)5 ± 21 of 4 0.01Down
Whole fly966 ± 874 of 4

Looking for CG12385-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime