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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12386-RA through 18771 annotations produced 1 hits



etaTrypsin (etaTry):

Annotation Number : CG12386
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011554
Gbrowse : chr2R:7228139-7228928 (-) // 100.0 //
Probeset : 1639322_at
Accessions : protein= NP_523692;, nucleotide= NM_078968;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0011554.
Homophila reports that CG12386 is a close match (1e-13) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
BioGrid reports that CG12386 interacts with CG32635 .
VDRC has 2 RNAi stocks for FBgn0011554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye5 ± 11 of 4 0.04Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland12 ± 11 of 4 0.10Down
Crop6 ± 11 of 4 0.10Down
Midgut1603 ± 384 of 412.50Up
Tubule11 ± 61 of 4 0.10Down
Hindgut307 ± 134 of 4 2.40Up
Heart2 ± 00 of 4 0.02Down
Fat body3 ± 20 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands6 ± 10 of 4 0.00Down
Virgin spermatheca6 ± 11 of 4 0.05Down
Mated spermatheca6 ± 11 of 4 0.05Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland3 ± 10 of 4 0.03Down
Larval midgut1058 ± 334 of 4 8.26Up
Larval tubule8 ± 01 of 4 0.10Down
Larval hindgut136 ± 184 of 4 1.07None
Larval fat body36 ± 44 of 4 0.30Down
Larval trachea3 ± 10 of 4 0.03Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)4 ± 01 of 4 0.03Down
Whole fly128 ± 174 of 4

Looking for CG12386-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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