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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12389-RA through 18771 annotations produced 1 hits



Farnesyl diphosphate synthase (Fpps):

Annotation Number : CG12389
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025373
Gbrowse : chr2R:7193006-7195070 (-) // 100.0 //
Probeset : 1628428_at
Accessions : protein= NP_477380;, nucleotide= NM_058032;
Interpro : 0004161 // dimethylallyltranstransferase activity // non-traceable author statement /// 0004161 // dimethylallyltranstra
FlyMine data for FBgn0025373.
BioGrid reports that CG12389 interacts with CG17134 CG3506 CG5164 CG8614 .
VDRC has 1 RNAi stocks for FBgn0025373 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 24 of 4 0.50Down
Head115 64 of 4 0.40Down
Eye75 24 of 4 0.28Down
Thoracicoabdominal ganglion113 24 of 4 0.40Down
Salivary gland124 44 of 4 0.47Down
Crop1020 134 of 4 3.80Up
Midgut682 294 of 4 2.60Up
Tubule777 594 of 4 2.90Up
Hindgut752 214 of 4 2.80Up
Heart222 64 of 4 0.83Down
Fat body154 164 of 4 0.58Down
Ovary379 14 of 4 1.40Up
Testis394 104 of 4 1.50Up
Male accessory glands253 44 of 4 0.90None
Virgin spermatheca117 54 of 4 0.44Down
Mated spermatheca82 34 of 4 0.31Down
Adult carcass115 74 of 4 0.40Down
Larval CNS374 134 of 4 1.40Up
Larval Salivary gland311 184 of 4 1.17None
Larval midgut897 374 of 4 3.36Up
Larval tubule1584 454 of 4 5.90Up
Larval hindgut1089 154 of 4 4.07Up
Larval fat body388 334 of 4 1.50Up
Larval trachea368 234 of 4 1.38Up
Larval carcass396 364 of 4 1.49Up
S2 cells (growing)957 214 of 4 3.58Up
Whole fly267 74 of 4

Looking for CG12389-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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