Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12391-RA through 18771 annotations produced 1 hits



(CG12391):

Annotation Number : CG12391
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033581
Gbrowse : chr2R:7035101-7037561 (-) // 100.0 //
Probeset : 1641281_at
Accessions : protein= NP_610639;, nucleotide= NM_136795;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033581.
BDGP gene expression has embryonic in situ data for CG12391: 13 pix of staining in 18 body parts.
Homophila reports that CG12391 is a close match (7e-11) to human gene SLUG;SNAI2;WS2D (NP_003059), a gene associated with Melanoma metastasis, modification of (1);Piebaldism, 172800 (3);Waardenburg syndrome, type IID, 608890 (3).
BioGrid reports that CG12391 interacts with CG9331 .
TRiP has 2 RNAi stocks for FBgn0033581 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 34 of 4 1.20Up
Head53 54 of 4 0.60Down
Eye38 44 of 4 0.45Down
Thoracicoabdominal ganglion71 24 of 4 0.80None
Salivary gland46 44 of 4 0.55Down
Crop57 34 of 4 0.70Down
Midgut29 14 of 4 0.30Down
Tubule41 14 of 4 0.50Down
Hindgut52 34 of 4 0.60Down
Heart31 34 of 4 0.37Down
Fat body57 94 of 4 0.68Down
Ovary252 174 of 4 3.00Up
Testis16 14 of 4 0.20Down
Male accessory glands35 34 of 4 0.40Down
Virgin spermatheca77 64 of 4 0.91None
Mated spermatheca71 04 of 4 0.84None
Adult carcass40 54 of 4 0.50Down
Larval CNS196 444 of 4 2.31Up
Larval Salivary gland92 64 of 4 1.09None
Larval midgut39 14 of 4 0.46Down
Larval tubule49 34 of 4 0.60Down
Larval hindgut54 24 of 4 0.64Down
Larval fat body37 54 of 4 0.40Down
Larval trachea42 24 of 4 0.49Down
Larval carcass57 44 of 4 0.68Down
S2 cells (growing)162 54 of 4 1.91Up
Whole fly85 54 of 4

Looking for CG12391-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime