FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12396-RA through 18771 annotations produced 1 hits

Nnp-1 (Nnp-1):

Annotation Number : CG12396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022069
Gbrowse : chr2L:13363299-13366188 (-) // 100.0 //
Probeset : 1639509_at
Accessions : protein= NP_651976;, nucleotide= NM_143719;
Pathway : "0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author st
Interpro : small subunit precursor // inferred from electronic annotation"
FlyMine data for FBgn0022069.
BioGrid reports that CG12396 interacts with CG12620 CG6380 .
VDRC has 3 RNAi stocks for FBgn0022069 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	232 ± 9	4 of 4	0.50	Down
Head	171 ± 5	4 of 4	0.40	Down
Eye	120 ± 3	4 of 4	0.27	Down
Thoracicoabdominal ganglion	284 ± 9	4 of 4	0.60	Down
Salivary gland	123 ± 7	4 of 4	0.28	Down
Crop	176 ± 4	4 of 4	0.40	Down
Midgut	134 ± 3	4 of 4	0.30	Down
Tubule	179 ± 28	4 of 4	0.40	Down
Hindgut	109 ± 2	4 of 4	0.20	Down
Heart	134 ± 11	4 of 4	0.30	Down
Fat body	324 ± 40	4 of 4	0.73	Down
Ovary	922 ± 13	4 of 4	2.10	Up
Testis	239 ± 16	4 of 4	0.50	Down
Male accessory glands	333 ± 12	4 of 4	0.70	Down
Virgin spermatheca	230 ± 15	4 of 4	0.52	Down
Mated spermatheca	384 ± 3	4 of 4	0.86	Down
Adult carcass	135 ± 9	4 of 4	0.30	Down
Larval CNS	772 ± 36	4 of 4	1.73	Up
Larval Salivary gland	457 ± 47	4 of 4	1.02	None
Larval midgut	202 ± 23	4 of 4	0.45	Down
Larval tubule	68 ± 3	4 of 4	0.20	Down
Larval hindgut	349 ± 51	4 of 4	0.78	None
Larval fat body	101 ± 12	4 of 4	0.20	Down
Larval trachea	414 ± 59	4 of 4	0.93	None
Larval carcass	518 ± 124	4 of 4	1.16	None
S2 cells (growing)	462 ± 7	4 of 4	1.04	None
Whole fly	446 ± 18	4 of 4

Looking for CG12396-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720