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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12398-RA through 18771 annotations produced 1 hits



(CG12398):

Annotation Number : CG12398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030596
Gbrowse : chrX:14805875-14807830 (-) // 100.0 //
Probeset : 1627359_at
Accessions : protein= NP_572985;, nucleotide= NM_132757;
Pathway : 0042600 // chorion // inferred from direct assay
Interpro : "0004344 // glucose dehydrogenase activity // inferred from sequence or structural similarity /// 0004344 // glucose deh
FlyMine data for FBgn0030596.
VDRC has 1 RNAi stocks for FBgn0030596 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 01 of 4 0.10None
Head4 ± 11 of 4 0.10None
Eye3 ± 00 of 4 0.10Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.10None
Salivary gland8 ± 21 of 4 0.28None
Crop3 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule5 ± 10 of 4 0.20Down
Hindgut4 ± 11 of 4 0.10None
Heart3 ± 11 of 4 0.11Down
Fat body6 ± 03 of 4 0.19None
Ovary43 ± 64 of 4 1.30None
Testis2 ± 00 of 4 0.10Down
Male accessory glands5 ± 20 of 4 0.20None
Virgin spermatheca1 ± 00 of 4 0.06Down
Mated spermatheca3 ± 00 of 4 0.11Down
Adult carcass7 ± 30 of 4 0.20None
Larval CNS2 ± 10 of 4 0.07Down
Larval Salivary gland3 ± 10 of 4 0.11Down
Larval midgut4 ± 00 of 4 0.12None
Larval tubule5 ± 02 of 4 0.20None
Larval hindgut2 ± 00 of 4 0.08Down
Larval fat body5 ± 10 of 4 0.20None
Larval trachea2 ± 10 of 4 0.07Down
Larval carcass4 ± 12 of 4 0.14None
S2 cells (growing)119 ± 34 of 4 3.71Up
Whole fly32 ± 94 of 4

Looking for CG12398-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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