FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12399-RA through 18771 annotations produced 1 hits

chr2L:3146483-3159630 (-) // 100.0 // (Mothers against Decapentaplegic):

Annotation Number : CG12399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634683_at
Accessions : protein= , nucleotide= NP_477017;
Pathway : "0001745 // compound eye morphogenesis // inferred from mutant phenotype /// 0006350 // transcription // inferred from e
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for full length.
Homophila reports that CG12399 is a close match (4e-19) to human gene SMAD7;MADH7;CRCS3 (NP_005895), a gene associated with {Colorectal cancer, susceptiblity to, 3}, 612229 (3).
BioGrid reports that CG12399 interacts with CG5903 CG8993 CG13576 CG1472 CG15177 CG3779 CG4795 CG6576 CG6720 CG6891 CG9554 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG1891 CG1891 CG1891 CG17579 CG9224 CG14026 CG14026 CG14026 CG14026 CG1389 CG5201 CG1046 CG33188 CG1034 CG13510 CG13701 CG8993 CG2948 CG6235 CG11525 CG18745 CG32428 CG4673 CG7602 CG11849 CG6549 CG10021 CG4184 CG13900 CG17964 CG4057 CG8532 CG4244 CG6369 CG3093 CG12189 CG33109 CG4943 CG13512 CG12436 CG31534 CG1775 CG9027 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	153 ± 6	4 of 4	0.60	Down
Head	131 ± 7	4 of 4	0.50	Down
Eye	83 ± 7	4 of 4	0.34	Down
Thoracicoabdominal ganglion	145 ± 5	4 of 4	0.60	Down
Salivary gland	194 ± 5	4 of 4	0.79	Down
Crop	146 ± 6	4 of 4	0.60	Down
Midgut	279 ± 3	4 of 4	1.10	None
Tubule	127 ± 5	4 of 4	0.50	Down
Hindgut	119 ± 5	4 of 4	0.50	Down
Heart	170 ± 13	4 of 4	0.69	Down
Fat body	314 ± 21	4 of 4	1.27	Up
Ovary	524 ± 11	4 of 4	2.10	Up
Testis	77 ± 5	4 of 4	0.30	Down
Male accessory glands	168 ± 8	4 of 4	0.70	Down
Virgin spermatheca	243 ± 26	4 of 4	0.99	None
Mated spermatheca	248 ± 19	4 of 4	1.00	None
Adult carcass	150 ± 8	4 of 4	0.60	Down
Larval CNS	231 ± 10	4 of 4	0.94	None
Larval Salivary gland	183 ± 10	4 of 4	0.74	Down
Larval midgut	336 ± 6	4 of 4	1.36	Up
Larval tubule	203 ± 7	4 of 4	0.80	Down
Larval hindgut	163 ± 7	4 of 4	0.66	Down
Larval fat body	235 ± 12	4 of 4	1.00	None
Larval trachea	125 ± 7	4 of 4	0.51	Down
Larval carcass	215 ± 18	4 of 4	0.87	None
S2 cells (growing)	126 ± 6	4 of 4	0.51	Down
Whole fly	247 ± 11	4 of 4

Looking for CG12399-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720