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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1240-RA through 18771 annotations produced 1 hits



(CG1240):

Annotation Number : CG1240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035370
Gbrowse : chr3L:2766995-2768399 (+) // 100.0 //
Probeset : 1636036_at
Accessions : protein= NP_647745;, nucleotide= NM_139488;
FlyMine data for FBgn0035370.
BDGP gene expression has embryonic in situ data for CG1240: 8 pix of staining in 2 body parts.
BioGrid reports that CG1240 interacts with CG16972 .
VDRC has 1 RNAi stocks for FBgn0035370 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain385 ± 114 of 4 1.00None
Head245 ± 34 of 4 0.70Down
Eye234 ± 24 of 4 0.64Down
Thoracicoabdominal ganglion374 ± 84 of 4 1.00None
Salivary gland390 ± 164 of 4 1.06None
Crop233 ± 64 of 4 0.60Down
Midgut244 ± 74 of 4 0.70Down
Tubule241 ± 124 of 4 0.70Down
Hindgut264 ± 44 of 4 0.70None
Heart174 ± 54 of 4 0.47Down
Fat body210 ± 134 of 4 0.57Down
Ovary682 ± 114 of 4 1.90Up
Testis358 ± 114 of 4 1.00None
Male accessory glands611 ± 194 of 4 1.70Up
Virgin spermatheca249 ± 64 of 4 0.68Down
Mated spermatheca256 ± 64 of 4 0.70Down
Adult carcass183 ± 84 of 4 0.50Down
Larval CNS1322 ± 584 of 4 3.60Up
Larval Salivary gland1044 ± 224 of 4 2.84Up
Larval midgut286 ± 54 of 4 0.78None
Larval tubule403 ± 94 of 4 1.10None
Larval hindgut422 ± 124 of 4 1.15None
Larval fat body338 ± 104 of 4 0.90None
Larval trachea613 ± 884 of 4 1.67Up
Larval carcass562 ± 204 of 4 1.53Up
S2 cells (growing)843 ± 214 of 4 2.30Up
Whole fly367 ± 344 of 4

Looking for CG1240-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime