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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12402-RA through 18771 annotations produced 1 hits



(CG12402):

Annotation Number : CG12402
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038202
Gbrowse : chr3R:9930594-9933537 (-) // 100.0 //
Probeset : 1634709_at
Accessions : protein= NP_650335;, nucleotide= NM_142078;
FlyMine data for FBgn0038202.
TRiP has 1 RNAi stocks for FBgn0038202 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038202 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain231 ± 34 of 420.60Up
Head31 ± 24 of 4 2.80Up
Eye12 ± 23 of 4 1.11None
Thoracicoabdominal ganglion96 ± 74 of 4 8.50Up
Salivary gland28 ± 64 of 4 2.50None
Crop36 ± 34 of 4 3.30Up
Midgut4 ± 10 of 4 0.40Down
Tubule4 ± 00 of 4 0.40Down
Hindgut12 ± 14 of 4 1.10None
Heart14 ± 14 of 4 1.27None
Fat body16 ± 24 of 4 1.48Up
Ovary0 ± 00 of 4 0.00Down
Testis84 ± 54 of 4 7.50Up
Male accessory glands5 ± 20 of 4 0.50None
Virgin spermatheca4 ± 11 of 4 0.39Down
Mated spermatheca4 ± 10 of 4 0.37Down
Adult carcass12 ± 33 of 4 1.10None
Larval CNS180 ± 14 of 416.02Up
Larval Salivary gland1 ± 00 of 4 0.11Down
Larval midgut7 ± 01 of 4 0.65Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut8 ± 13 of 4 0.76None
Larval fat body18 ± 83 of 4 1.60None
Larval trachea2 ± 10 of 4 0.20Down
Larval carcass2 ± 00 of 4 0.21Down
S2 cells (growing)2 ± 00 of 4 0.22Down
Whole fly11 ± 14 of 4

Looking for CG12402-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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