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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12404-RA through 18771 annotations produced 1 hits



(CG12404):

Annotation Number : CG12404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032465
Gbrowse : chr2L:12993747-13000631 (-) // 100.0 //
Probeset : 1633389_at
Accessions : protein= NP_609596;, nucleotide= NM_135752;
Pathway : 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from el
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032465.
BioGrid reports that CG12404 interacts with CG5484 CG6618 CG17739 CG18262 CG5140 CG5527 CG7111 .
VDRC has 2 RNAi stocks for FBgn0032465 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain238 24 of 4 1.50Up
Head180 154 of 4 1.10None
Eye204 84 of 4 1.26Up
Thoracicoabdominal ganglion243 64 of 4 1.50Up
Salivary gland710 144 of 4 4.36Up
Crop249 154 of 4 1.50Up
Midgut231 64 of 4 1.40Up
Tubule259 164 of 4 1.60Up
Hindgut214 54 of 4 1.30Up
Heart189 34 of 4 1.17None
Fat body240 234 of 4 1.48Up
Ovary212 44 of 4 1.30Up
Testis246 54 of 4 1.50Up
Male accessory glands752 324 of 4 4.60Up
Virgin spermatheca239 164 of 4 1.47Up
Mated spermatheca241 44 of 4 1.49Up
Adult carcass193 84 of 4 1.20Up
Larval CNS181 124 of 4 1.11None
Larval Salivary gland767 514 of 4 4.72Up
Larval midgut186 64 of 4 1.15None
Larval tubule450 74 of 4 2.80Up
Larval hindgut200 34 of 4 1.23Up
Larval fat body277 144 of 4 1.70Up
Larval trachea275 184 of 4 1.69Up
Larval carcass258 124 of 4 1.59Up
S2 cells (growing)534 134 of 4 3.28Up
Whole fly162 94 of 4

Looking for CG12404-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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