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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12408-RA through 18771 annotations produced 1 hits



TpnC4 (TpnC4):

Annotation Number : CG12408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033027
Gbrowse : chr2R:1390940-1395371 (-) // 100.0 //
Probeset : 1634310_at
Accessions : protein= NP_001163055; /// NP_610173;, nucleotide= NM_001169584; /// NM_136329;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0033027.
BDGP gene expression has embryonic in situ data for CG12408: 4 pix of staining in 1 body parts.
Homophila reports that CG12408 is a close match (1e-13) to human gene CABP4;CSNB2B (NP_660201), a gene associated with Night blindness, congenital stationary, type 2B, 610427 (3).
BioGrid reports that CG12408 interacts with CG14145 .
VDRC has 3 RNAi stocks for FBgn0033027 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head4 ± 11 of 4 0.00Down
Eye2 ± 21 of 4 0.00Down
Thoracicoabdominal ganglion10 ± 52 of 4 0.00Down
Salivary gland6 ± 31 of 4 0.01Down
Crop7 ± 22 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart6 ± 11 of 4 0.01Down
Fat body8 ± 21 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis4 ± 02 of 4 0.00Down
Male accessory glands9 ± 11 of 4 0.00Down
Virgin spermatheca6 ± 12 of 4 0.01Down
Mated spermatheca9 ± 13 of 4 0.01Down
Adult carcass1750 ± 1804 of 4 2.70Up
Larval CNS1 ± 10 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut0 ± 00 of 4 0.00Down
Larval tubule10 ± 13 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.00Down
Larval fat body11 ± 33 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)150 ± 64 of 4 0.23Down
Whole fly650 ± 1484 of 4

Looking for CG12408-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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