FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12443-RA through 18771 annotations produced 1 hits

thisbe (ths):

Annotation Number : CG12443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033652
Gbrowse : chr2R:7697312-7699373 (+) // 100.0 //
Probeset : 1625432_at
Accessions : protein= NP_610701;, nucleotide= NM_136857;
Interpro : 0005104 // fibroblast growth factor receptor binding // non-traceable author statement /// 0005104 // fibroblast growth
FlyMine data for FBgn0033652.
VDRC has 3 RNAi stocks for FBgn0033652 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	33 ± 0	4 of 4	9.10	Up
Head	10 ± 3	1 of 4	2.90	None
Eye	15 ± 0	4 of 4	4.24	Up
Thoracicoabdominal ganglion	34 ± 6	4 of 4	9.20	Up
Salivary gland	3 ± 0	0 of 4	0.91	None
Crop	2 ± 1	0 of 4	0.60	None
Midgut	7 ± 3	0 of 4	1.90	None
Tubule	1 ± 0	0 of 4	0.30	Down
Hindgut	3 ± 0	0 of 4	0.90	None
Heart	9 ± 1	1 of 4	2.54	None
Fat body	1 ± 0	0 of 4	0.43	None
Ovary	1 ± 0	0 of 4	0.40	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	3 ± 1	0 of 4	1.00	None
Virgin spermatheca	2 ± 0	0 of 4	0.55	None
Mated spermatheca	3 ± 2	0 of 4	0.89	None
Adult carcass	3 ± 0	0 of 4	0.80	None
Larval CNS	8 ± 1	1 of 4	2.41	None
Larval Salivary gland	4 ± 1	0 of 4	1.25	None
Larval midgut	5 ± 1	0 of 4	1.36	None
Larval tubule	3 ± 1	0 of 4	0.80	None
Larval hindgut	2 ± 1	0 of 4	0.54	None
Larval fat body	2 ± 0	0 of 4	0.60	None
Larval trachea	1 ± 0	0 of 4	0.46	None
Larval carcass	5 ± 2	0 of 4	1.43	None
S2 cells (growing)	2 ± 0	0 of 4	0.55	None
Whole fly	3 ± 2	0 of 4

Looking for CG12443-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720