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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12448-RA through 18771 annotations produced 1 hits



(CG12448):

Annotation Number : CG12448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028857
Gbrowse : chr2L:15941559-15942440 (+) // 100.0 //
Probeset : 1626873_a_at
Accessions : protein= NP_723942;, nucleotide= NM_165140;
Interpro : 0032027 // myosin light chain binding // inferred from reviewed computational analysis
FlyMine data for FBgn0028857.
BioGrid reports that CG12448 interacts with CG8472 .
VDRC has 2 RNAi stocks for FBgn0028857 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland10 20 of 4 0.14Down
Crop2 10 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart2 00 of 4 0.04Down
Fat body4 30 of 4 0.06Down
Ovary0 00 of 4 0.00Down
Testis787 544 of 411.00Up
Male accessory glands5 20 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.02Down
Adult carcass8 30 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland3 10 of 4 0.05Down
Larval midgut2 10 of 4 0.04Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body103 653 of 4 1.40None
Larval trachea3 61 of 4 0.05Down
Larval carcass0 00 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly71 34 of 4

Looking for CG12448-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime