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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12477-RA through 18771 annotations produced 1 hits



(CG12477):

Annotation Number : CG12477
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036809
Gbrowse : chr3L:18715429-18716227 (-) // 100.0 //
Probeset : 1623456_at
Accessions : protein= NP_649055;, nucleotide= NM_140798;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0036809.
BioGrid reports that CG12477 interacts with CG4270 .
VDRC has 2 RNAi stocks for FBgn0036809 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head1 ± 00 of 4 0.10Down
Eye3 ± 00 of 4 0.31Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.30Down
Salivary gland12 ± 32 of 4 1.10None
Crop5 ± 10 of 4 0.50Down
Midgut1 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.30Down
Hindgut2 ± 10 of 4 0.20Down
Heart0 ± 00 of 4 0.08Down
Fat body4 ± 41 of 4 0.37Down
Ovary1 ± 01 of 4 0.20Down
Testis156 ± 54 of 414.30Up
Male accessory glands4 ± 10 of 4 0.40Down
Virgin spermatheca3 ± 00 of 4 0.33Down
Mated spermatheca6 ± 10 of 4 0.54None
Adult carcass9 ± 10 of 4 0.80None
Larval CNS2 ± 01 of 4 0.26Down
Larval Salivary gland2 ± 00 of 4 0.19Down
Larval midgut2 ± 00 of 4 0.20Down
Larval tubule3 ± 20 of 4 0.30Down
Larval hindgut4 ± 00 of 4 0.37Down
Larval fat body51 ± 194 of 4 4.70None
Larval trachea3 ± 10 of 4 0.36Down
Larval carcass3 ± 10 of 4 0.31Down
S2 cells (growing)17 ± 04 of 4 1.62Up
Whole fly10 ± 04 of 4

Looking for CG12477-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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