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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12490-RA through 18771 annotations produced 1 hits



(CG12490):

Annotation Number : CG12490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034782
Gbrowse : chr2R:18722528-18724070 (+) // 100.0 //
Probeset : 1636604_at
Accessions : protein= NP_611722;, nucleotide= NM_137878;
FlyMine data for FBgn0034782.
Homophila reports that CG12490 is a close match (3e-52) to human gene SIASD;SLC17A5;SLD (NP_036566), a gene associated with Salla disease, 604369 (3);Sialic acid storage disorder, infantile, 269920 (3).
VDRC has 4 RNAi stocks for FBgn0034782 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head2 ± 10 of 4 1.20None
Eye1 ± 00 of 4 0.47None
Thoracicoabdominal ganglion0 ± 00 of 4 0.30None
Salivary gland3 ± 10 of 4 1.47None
Crop0 ± 00 of 4 0.30None
Midgut40 ± 54 of 416.70Up
Tubule2 ± 00 of 4 0.90None
Hindgut2 ± 10 of 4 1.00None
Heart1 ± 00 of 4 0.47None
Fat body1 ± 10 of 4 0.70None
Ovary2 ± 00 of 4 1.00None
Testis2 ± 10 of 4 0.80None
Male accessory glands5 ± 10 of 4 2.10None
Virgin spermatheca3 ± 10 of 4 1.60None
Mated spermatheca1 ± 00 of 4 0.62None
Adult carcass5 ± 10 of 4 2.40None
Larval CNS2 ± 10 of 4 0.85None
Larval Salivary gland1 ± 00 of 4 0.73None
Larval midgut61 ± 204 of 425.26None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut2 ± 00 of 4 1.14None
Larval fat body3 ± 10 of 4 1.40None
Larval trachea2 ± 20 of 4 1.00None
Larval carcass1 ± 00 of 4 0.41None
S2 cells (growing)0 ± 00 of 4 0.33None
Whole fly2 ± 00 of 4

Looking for CG12490-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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