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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12498-RA through 18771 annotations produced 1 hits



(CG12498):

Annotation Number : CG12498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040356
Gbrowse : chrX:2703999-2704785 (+) // 100.0 //
Probeset : 1637447_at
Accessions : protein= NP_570030;, nucleotide= NM_130674;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0040356.
BioGrid reports that CG12498 interacts with CG30084 .
VDRC has 2 RNAi stocks for FBgn0040356 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.16Down
Crop2 ± 10 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.03Down
Fat body0 ± 00 of 4 0.05Down
Ovary1 ± 00 of 4 0.10Down
Testis250 ± 124 of 412.70Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca0 ± 00 of 4 0.03Down
Adult carcass7 ± 30 of 4 0.40None
Larval CNS1 ± 20 of 4 0.08Down
Larval Salivary gland2 ± 10 of 4 0.14Down
Larval midgut3 ± 00 of 4 0.15Down
Larval tubule4 ± 20 of 4 0.20Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body31 ± 182 of 4 1.60None
Larval trachea1 ± 10 of 4 0.08Down
Larval carcass2 ± 10 of 4 0.15Down
S2 cells (growing)2 ± 00 of 4 0.10Down
Whole fly19 ± 34 of 4

Looking for CG12498-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime