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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12512-RA through 18771 annotations produced 1 hits



(CG12512):

Annotation Number : CG12512
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031703
Gbrowse : chr2L:5339224-5342349 (-) // 100.0 //
Probeset : 1638636_at
Accessions : protein= NP_608924;, nucleotide= NM_135080;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase act
FlyMine data for FBgn0031703.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 34 of 4 0.60Down
Head211 ± 144 of 4 2.30Up
Eye190 ± 54 of 4 2.05Up
Thoracicoabdominal ganglion81 ± 54 of 4 0.90None
Salivary gland320 ± 244 of 4 3.46Up
Crop530 ± 274 of 4 5.70Up
Midgut84 ± 44 of 4 0.90None
Tubule1278 ± 644 of 413.80Up
Hindgut152 ± 84 of 4 1.60Up
Heart141 ± 124 of 4 1.53Up
Fat body184 ± 244 of 4 2.00Up
Ovary70 ± 34 of 4 0.80Down
Testis35 ± 24 of 4 0.40Down
Male accessory glands124 ± 104 of 4 1.30Up
Virgin spermatheca193 ± 104 of 4 2.09Up
Mated spermatheca149 ± 74 of 4 1.61Up
Adult carcass211 ± 104 of 4 2.30Up
Larval CNS152 ± 484 of 4 1.64None
Larval Salivary gland58 ± 74 of 4 0.63Down
Larval midgut87 ± 44 of 4 0.94None
Larval tubule122 ± 184 of 4 1.30None
Larval hindgut172 ± 294 of 4 1.86None
Larval fat body9 ± 40 of 4 0.10Down
Larval trachea176 ± 424 of 4 1.90Up
Larval carcass38 ± 83 of 4 0.41Down
S2 cells (growing)195 ± 124 of 4 2.11Up
Whole fly92 ± 54 of 4

Looking for CG12512-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime