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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12526-RA through 18771 annotations produced 1 hits



Odorant receptor 67a (Or67a):

Annotation Number : CG12526
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036009
Gbrowse : chr3L:9523020-9524436 (+) // 100.0 //
Probeset : 1632726_at
Accessions : protein= NP_524005;, nucleotide= NM_079281;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0036009.
VDRC has 2 RNAi stocks for FBgn0036009 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head12 ± 22 of 4 2.60Up
Eye2 ± 00 of 4 0.59None
Thoracicoabdominal ganglion0 ± 00 of 4 0.20None
Salivary gland7 ± 20 of 4 1.71None
Crop3 ± 20 of 4 0.80None
Midgut5 ± 10 of 4 1.10None
Tubule2 ± 00 of 4 0.50Down
Hindgut1 ± 00 of 4 0.30None
Heart3 ± 10 of 4 0.67None
Fat body3 ± 20 of 4 0.67None
Ovary3 ± 10 of 4 0.70None
Testis7 ± 10 of 4 1.50None
Male accessory glands9 ± 40 of 4 2.00None
Virgin spermatheca4 ± 20 of 4 0.94None
Mated spermatheca4 ± 10 of 4 0.89None
Adult carcass2 ± 10 of 4 0.50None
Larval CNS0 ± 00 of 4 0.19None
Larval Salivary gland4 ± 10 of 4 1.03None
Larval midgut2 ± 00 of 4 0.62None
Larval tubule2 ± 10 of 4 0.50None
Larval hindgut1 ± 00 of 4 0.28None
Larval fat body4 ± 20 of 4 0.90None
Larval trachea3 ± 20 of 4 0.67None
Larval carcass2 ± 00 of 4 0.44None
S2 cells (growing)1 ± 00 of 4 0.22None
Whole fly4 ± 10 of 4

Looking for CG12526-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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