FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12529-RA through 18771 annotations produced 1 hits

glucose-6-phosphate 1dehydrogenase (Zw):

Annotation Number : CG12529
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004057
Gbrowse : chrX:19561265-19566385 (+) // 100.0 //
Probeset : 1625995_a_at
Accessions : protein= NP_523411; /// NP_728287;, nucleotide= NM_078687; /// NM_167676;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004345 // glucose-6-phosphate dehydrogenase ac
FlyMine data for FBgn0004057.
Homophila reports that CG12529 is a close match (1e-55) to human gene G6PDH;GDH;H6PD (NP_004276), a gene associated with Cortisone reductase deficiency, 604931 (3).
BioGrid reports that CG12529 interacts with CG3325 .
VDRC has 2 RNAi stocks for FBgn0004057 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 2	4 of 4	0.10	Down
Head	284 ± 20	4 of 4	1.50	Up
Eye	101 ± 9	4 of 4	0.54	Down
Thoracicoabdominal ganglion	19 ± 1	4 of 4	0.10	Down
Salivary gland	212 ± 15	4 of 4	1.12	None
Crop	1671 ± 88	4 of 4	8.80	Up
Midgut	324 ± 30	4 of 4	1.70	Up
Tubule	914 ± 57	4 of 4	4.80	Up
Hindgut	786 ± 53	4 of 4	4.20	Up
Heart	340 ± 51	4 of 4	1.80	None
Fat body	565 ± 102	4 of 4	2.99	Up
Ovary	77 ± 3	4 of 4	0.40	Down
Testis	200 ± 5	4 of 4	1.10	None
Male accessory glands	34 ± 2	4 of 4	0.20	Down
Virgin spermatheca	401 ± 18	4 of 4	2.12	Up
Mated spermatheca	273 ± 31	4 of 4	1.44	None
Adult carcass	804 ± 63	4 of 4	4.30	Up
Larval CNS	27 ± 2	4 of 4	0.14	Down
Larval Salivary gland	31 ± 4	4 of 4	0.17	Down
Larval midgut	122 ± 19	4 of 4	0.64	Down
Larval tubule	336 ± 10	4 of 4	1.80	Up
Larval hindgut	109 ± 9	4 of 4	0.58	Down
Larval fat body	146 ± 12	4 of 4	0.80	None
Larval trachea	108 ± 6	4 of 4	0.57	Down
Larval carcass	176 ± 38	4 of 4	0.93	None
S2 cells (growing)	123 ± 3	4 of 4	0.65	Down
Whole fly	189 ± 13	4 of 4

Looking for CG12529-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720