FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12540-RA through 18771 annotations produced 1 hits

(CG12540):

Annotation Number : CG12540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030570
Gbrowse : chrX:14390169-14391275 (+) // 100.0 //
Probeset : 1631289_at
Accessions : protein= NP_572963;, nucleotide= NM_132735;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030570.
BioGrid reports that CG12540 interacts with CG17829 CG3056 .
VDRC has 1 RNAi stocks for FBgn0030570 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	1 of 4	1.60	None
Head	3 ± 1	1 of 4	1.10	None
Eye	2 ± 0	1 of 4	1.04	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	1.50	None
Salivary gland	12 ± 1	1 of 4	4.78	Up
Crop	5 ± 1	1 of 4	2.10	None
Midgut	7 ± 1	0 of 4	2.90	Up
Tubule	4 ± 0	0 of 4	1.80	Up
Hindgut	6 ± 1	0 of 4	2.30	None
Heart	2 ± 0	0 of 4	0.98	None
Fat body	5 ± 3	1 of 4	2.22	None
Ovary	3 ± 0	1 of 4	1.30	None
Testis	2 ± 0	0 of 4	1.10	None
Male accessory glands	3 ± 1	0 of 4	1.20	None
Virgin spermatheca	6 ± 1	2 of 4	2.27	None
Mated spermatheca	4 ± 1	1 of 4	1.54	None
Adult carcass	7 ± 2	0 of 4	2.90	None
Larval CNS	4 ± 0	2 of 4	1.76	None
Larval Salivary gland	10 ± 0	2 of 4	3.88	Up
Larval midgut	8 ± 1	3 of 4	3.01	Up
Larval tubule	4 ± 0	1 of 4	1.80	None
Larval hindgut	5 ± 0	1 of 4	1.97	None
Larval fat body	5 ± 1	0 of 4	1.90	None
Larval trachea	3 ± 1	0 of 4	1.26	None
Larval carcass	6 ± 0	1 of 4	2.40	Up
S2 cells (growing)	4 ± 0	0 of 4	1.76	None
Whole fly	2 ± 0	0 of 4

Looking for CG12540-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720