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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12564-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG12564
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:21306295-21306822 (-) // 100.0 //
Probeset : 1626065_at
Accessions : protein= NP_001138225; /// NP_001138226; /// NP_608455; /// NP_728431;, nucleotide= NM_001144753; /// NM_001144754; /// NM_134611; /// NM_167755;


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.90None
Head3 ± 00 of 4 0.80None
Eye1 ± 00 of 4 0.43None
Thoracicoabdominal ganglion2 ± 00 of 4 0.60None
Salivary gland3 ± 10 of 4 0.78None
Crop1 ± 00 of 4 0.30Down
Midgut5 ± 00 of 4 1.30None
Tubule2 ± 00 of 4 0.50Down
Hindgut2 ± 10 of 4 0.60None
Heart2 ± 11 of 4 0.66None
Fat body3 ± 20 of 4 0.94None
Ovary1 ± 00 of 4 0.30Down
Testis2 ± 00 of 4 0.50None
Male accessory glands1 ± 00 of 4 0.30Down
Virgin spermatheca5 ± 10 of 4 1.30None
Mated spermatheca3 ± 10 of 4 0.80None
Adult carcass3 ± 10 of 4 0.90None
Larval CNS2 ± 20 of 4 0.57None
Larval Salivary gland1 ± 00 of 4 0.25Down
Larval midgut5 ± 10 of 4 1.26None
Larval tubule2 ± 10 of 4 0.60None
Larval hindgut2 ± 00 of 4 0.51None
Larval fat body4 ± 20 of 4 1.00None
Larval trachea2 ± 10 of 4 0.55None
Larval carcass1 ± 00 of 4 0.37Down
S2 cells (growing)7 ± 00 of 4 1.80Up
Whole fly4 ± 00 of 4

Looking for CG12564-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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