FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12590-RA through 18771 annotations produced 1 hits

(CG12590):

Annotation Number : CG12590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037294
Gbrowse : chr3R:985333-986623 (+) // 99.69 //
Probeset : 1633324_at
Accessions : protein= NP_649513;, nucleotide= NM_141256;
FlyMine data for FBgn0037294.
VDRC has 1 RNAi stocks for FBgn0037294 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.60	None
Head	4 ± 1	0 of 4	0.90	None
Eye	4 ± 1	1 of 4	0.89	None
Thoracicoabdominal ganglion	9 ± 3	1 of 4	1.90	None
Salivary gland	17 ± 5	0 of 4	3.49	None
Crop	5 ± 2	0 of 4	1.00	None
Midgut	10 ± 2	0 of 4	2.20	None
Tubule	3 ± 0	0 of 4	0.70	None
Hindgut	8 ± 0	0 of 4	1.60	Up
Heart	3 ± 1	0 of 4	0.75	None
Fat body	6 ± 1	0 of 4	1.39	None
Ovary	2 ± 0	0 of 4	0.50	Down
Testis	10 ± 1	4 of 4	2.00	Up
Male accessory glands	6 ± 2	0 of 4	1.40	None
Virgin spermatheca	7 ± 1	0 of 4	1.60	None
Mated spermatheca	3 ± 1	0 of 4	0.68	None
Adult carcass	8 ± 2	0 of 4	1.60	None
Larval CNS	6 ± 2	1 of 4	1.29	None
Larval Salivary gland	3 ± 1	0 of 4	0.64	None
Larval midgut	6 ± 0	0 of 4	1.29	None
Larval tubule	5 ± 1	0 of 4	1.10	None
Larval hindgut	3 ± 0	0 of 4	0.61	None
Larval fat body	18 ± 3	0 of 4	3.80	Up
Larval trachea	2 ± 2	0 of 4	0.58	None
Larval carcass	5 ± 1	0 of 4	1.20	None
S2 cells (growing)	5 ± 1	0 of 4	1.08	None
Whole fly	5 ± 0	0 of 4

Looking for CG12590-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720