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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12593-RA through 18771 annotations produced 1 hits

dpr4 (dpr4):

Annotation Number : CG12593
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053512
Gbrowse : chr3R:7360221-7362617 (-) // 100.0 //
Probeset : 1624295_at
Accessions : protein= NP_001014616; /// NP_001163589;, nucleotide= NM_001014616; /// NM_001170118;
FlyMine data for FBgn0053512.
VDRC has 4 RNAi stocks for FBgn0053512 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 34 of 434.40Up
Head21 24 of 4 4.60Up
Eye9 10 of 4 2.13None
Thoracicoabdominal ganglion83 84 of 418.00Up
Salivary gland3 00 of 4 0.64None
Crop1 00 of 4 0.30None
Midgut2 00 of 4 0.50None
Tubule4 10 of 4 0.90None
Hindgut1 00 of 4 0.20None
Heart0 00 of 4 0.21None
Fat body7 60 of 4 1.66None
Ovary1 00 of 4 0.20None
Testis36 54 of 4 7.80Up
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca3 10 of 4 0.85None
Mated spermatheca7 10 of 4 1.58None
Adult carcass2 00 of 4 0.40None
Larval CNS34 74 of 4 7.46Up
Larval Salivary gland2 10 of 4 0.59None
Larval midgut1 00 of 4 0.40None
Larval tubule1 00 of 4 0.30None
Larval hindgut2 00 of 4 0.55None
Larval fat body7 20 of 4 1.60None
Larval trachea3 10 of 4 0.65None
Larval carcass4 10 of 4 0.89None
S2 cells (growing)0 00 of 4 0.21None
Whole fly4 20 of 4

Looking for CG12593-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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