Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12598-RA through 18771 annotations produced 1 hits



Adenosine deaminase acting on RNA (Adar):

Annotation Number : CG12598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026086
Gbrowse : chrX:1667782-1678034 (+) // 100.0 //
Probeset : 1634276_a_at
Accessions : protein= NP_001033821; /// NP_569940; /// NP_726761;, nucleotide= NM_001038732; /// NM_130584; /// NM_166903;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // inferred by curator
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred fro
FlyMine data for FBgn0026086.
Homophila reports that CG12598 is a close match (3e-64) to human gene ADAR;DRADA;DSH;DSRAD;G1P1;IFI4 (NP_001102), a gene associated with Dyschromatosis symmetrica hereditaria, 127400 (3).
TRiP has 1 RNAi stocks for FBgn0026086 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026086 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 2.20Up
Head16 33 of 4 0.90None
Eye20 33 of 4 1.11None
Thoracicoabdominal ganglion30 54 of 4 1.60None
Salivary gland26 33 of 4 1.40None
Crop22 14 of 4 1.20None
Midgut9 10 of 4 0.50Down
Tubule10 02 of 4 0.60Down
Hindgut17 04 of 4 0.90None
Heart6 11 of 4 0.35Down
Fat body7 20 of 4 0.38Down
Ovary11 04 of 4 0.60Down
Testis18 14 of 4 1.00None
Male accessory glands18 14 of 4 1.00None
Virgin spermatheca3 10 of 4 0.18Down
Mated spermatheca6 10 of 4 0.37Down
Adult carcass43 34 of 4 2.30Up
Larval CNS26 14 of 4 1.41Up
Larval Salivary gland8 11 of 4 0.47Down
Larval midgut5 00 of 4 0.30Down
Larval tubule22 04 of 4 1.20None
Larval hindgut15 14 of 4 0.81None
Larval fat body6 21 of 4 0.40Down
Larval trachea20 34 of 4 1.11None
Larval carcass13 12 of 4 0.71None
S2 cells (growing)19 04 of 4 1.05None
Whole fly18 13 of 4

Looking for CG12598-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime