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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12620-RA through 18771 annotations produced 1 hits



(CG12620):

Annotation Number : CG12620
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032626
Gbrowse : chr2L:17087726-17088588 (+) // 100.0 //
Probeset : 1626195_at
Accessions : protein= NP_609828;, nucleotide= NM_135984;
Interpro : 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein b
FlyMine data for FBgn0032626.
BioGrid reports that CG12620 interacts with CG1553 CG16812 CG31291 CG32685 CG5650 CG6477 CG9238 CG17657 CG1975 CG2096 CG31457 .
VDRC has 3 RNAi stocks for FBgn0032626 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye1 10 of 4 0.04Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland3 10 of 4 0.08Down
Crop1 10 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart2 00 of 4 0.05Down
Fat body5 30 of 4 0.13Down
Ovary1 00 of 4 0.00Down
Testis453 84 of 410.50Up
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.02Down
Mated spermatheca1 00 of 4 0.04Down
Adult carcass3 10 of 4 0.10Down
Larval CNS1 10 of 4 0.04Down
Larval Salivary gland1 00 of 4 0.03Down
Larval midgut1 00 of 4 0.03Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut1 00 of 4 0.02Down
Larval fat body79 453 of 4 1.80None
Larval trachea1 10 of 4 0.03Down
Larval carcass2 00 of 4 0.05Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly43 74 of 4

Looking for CG12620-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime