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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12624-RA through 18771 annotations produced 1 hits

CG34143 (Ir10a):

Annotation Number : CG12624
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083979
Gbrowse : chrX:11202565-11203841 (-) // 100.0 //
Probeset : 1630956_at
Accessions : protein= NP_001096949;, nucleotide= NM_001103479;
FlyMine data for FBgn0083979.
VDRC has 5 RNAi stocks for FBgn0083979 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head3 10 of 4 1.00None
Eye2 10 of 4 0.75None
Thoracicoabdominal ganglion1 00 of 4 0.50None
Salivary gland11 51 of 4 3.08None
Crop3 10 of 4 0.80None
Midgut4 20 of 4 1.40None
Tubule2 00 of 4 0.80None
Hindgut1 00 of 4 0.30None
Heart2 10 of 4 0.55None
Fat body16 112 of 4 4.46None
Ovary2 10 of 4 0.80None
Testis1 00 of 4 0.40None
Male accessory glands1 00 of 4 0.50None
Virgin spermatheca24 24 of 4 6.67Up
Mated spermatheca21 63 of 4 6.03None
Adult carcass3 20 of 4 1.00None
Larval CNS20 123 of 4 5.59None
Larval Salivary gland3 00 of 4 1.02None
Larval midgut3 00 of 4 0.97None
Larval tubule2 10 of 4 0.60None
Larval hindgut2 00 of 4 0.81None
Larval fat body3 10 of 4 0.90None
Larval trachea0 00 of 4 0.25None
Larval carcass3 00 of 4 0.84None
S2 cells (growing)1 00 of 4 0.31None
Whole fly3 10 of 4

Looking for CG12624-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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