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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1265-RB through 18771 annotations produced 1 hits



(CG1265):

Annotation Number : CG1265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035517
Gbrowse : chr3L:4254773-4256055 (+) // 100.0 //
Probeset : 1636198_at
Accessions : protein= NP_647878;, nucleotide= NM_139621;
FlyMine data for FBgn0035517.
VDRC has 2 RNAi stocks for FBgn0035517 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain264 ± 34 of 4 1.20None
Head225 ± 154 of 4 1.00None
Eye231 ± 104 of 4 1.02None
Thoracicoabdominal ganglion383 ± 74 of 4 1.70Up
Salivary gland37 ± 44 of 4 0.16Down
Crop105 ± 44 of 4 0.50Down
Midgut763 ± 114 of 4 3.40Up
Tubule22 ± 33 of 4 0.10Down
Hindgut1046 ± 224 of 4 4.60Up
Heart159 ± 34 of 4 0.70Down
Fat body72 ± 54 of 4 0.32Down
Ovary135 ± 64 of 4 0.60Down
Testis121 ± 74 of 4 0.50Down
Male accessory glands23 ± 14 of 4 0.10Down
Virgin spermatheca43 ± 24 of 4 0.19Down
Mated spermatheca50 ± 24 of 4 0.22Down
Adult carcass482 ± 244 of 4 2.10Up
Larval CNS214 ± 284 of 4 0.94None
Larval Salivary gland16 ± 14 of 4 0.07Down
Larval midgut897 ± 194 of 4 3.95Up
Larval tubule67 ± 94 of 4 0.30Down
Larval hindgut653 ± 394 of 4 2.87Up
Larval fat body40 ± 24 of 4 0.20Down
Larval trachea210 ± 374 of 4 0.93None
Larval carcass1525 ± 1174 of 4 6.71Up
S2 cells (growing)424 ± 104 of 4 1.87Up
Whole fly227 ± 144 of 4

Looking for CG1265-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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