Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12656-RA through 18771 annotations produced 1 hits



(CG34331):

Annotation Number : CG12656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085360
Gbrowse : chrX:20016487-20017106 (+) // 100.0 //
Probeset : 1624599_at
Accessions : protein= NP_001097032;, nucleotide= NM_001103562;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0085360.
VDRC has 6 RNAi stocks for FBgn0085360 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 ± 54 of 4 0.30Down
Head755 ± 794 of 4 4.00Up
Eye487 ± 564 of 4 2.58Up
Thoracicoabdominal ganglion29 ± 14 of 4 0.20Down
Salivary gland14 ± 21 of 4 0.07Down
Crop14 ± 13 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule11 ± 12 of 4 0.10Down
Hindgut56 ± 64 of 4 0.30Down
Heart1390 ± 834 of 4 7.35Up
Fat body1350 ± 804 of 4 7.13Up
Ovary3 ± 10 of 4 0.00Down
Testis11 ± 14 of 4 0.10Down
Male accessory glands3 ± 20 of 4 0.00Down
Virgin spermatheca495 ± 424 of 4 2.62Up
Mated spermatheca474 ± 364 of 4 2.51Up
Adult carcass821 ± 944 of 4 4.30Up
Larval CNS5 ± 01 of 4 0.03Down
Larval Salivary gland24 ± 53 of 4 0.13Down
Larval midgut7 ± 20 of 4 0.04Down
Larval tubule6 ± 22 of 4 0.00Down
Larval hindgut27 ± 24 of 4 0.15Down
Larval fat body274 ± 244 of 4 1.50Up
Larval trachea94 ± 174 of 4 0.50Down
Larval carcass167 ± 54 of 4 0.89None
S2 cells (growing)27 ± 04 of 4 0.14Down
Whole fly189 ± 174 of 4

Looking for CG12656-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime