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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12663-RA through 18771 annotations produced 1 hits



CG12663 (Ir7a):

Annotation Number : CG12663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029961
Gbrowse : chrX:7659014-7660859 (+) // 100.0 //
Probeset : 1625305_at
Accessions : protein= NP_572406;, nucleotide= NM_132178;
FlyMine data for FBgn0029961.
VDRC has 1 RNAi stocks for FBgn0029961 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.90None
Head3 ± 00 of 4 1.00None
Eye3 ± 00 of 4 0.93None
Thoracicoabdominal ganglion3 ± 10 of 4 0.80None
Salivary gland21 ± 14 of 4 5.27Up
Crop7 ± 02 of 4 1.70None
Midgut4 ± 00 of 4 1.20None
Tubule5 ± 00 of 4 1.40Up
Hindgut5 ± 11 of 4 1.30None
Heart4 ± 00 of 4 1.21None
Fat body10 ± 32 of 4 2.69Up
Ovary3 ± 00 of 4 0.80None
Testis5 ± 12 of 4 1.20None
Male accessory glands9 ± 10 of 4 2.40Up
Virgin spermatheca8 ± 03 of 4 2.19Up
Mated spermatheca9 ± 33 of 4 2.38None
Adult carcass4 ± 10 of 4 1.00None
Larval CNS4 ± 03 of 4 1.09None
Larval Salivary gland3 ± 11 of 4 0.90None
Larval midgut6 ± 10 of 4 1.51None
Larval tubule7 ± 03 of 4 1.90Up
Larval hindgut4 ± 13 of 4 1.03None
Larval fat body10 ± 21 of 4 2.50None
Larval trachea3 ± 20 of 4 0.88None
Larval carcass4 ± 11 of 4 1.11None
S2 cells (growing)5 ± 03 of 4 1.28None
Whole fly4 ± 11 of 4

Looking for CG12663-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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