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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12673-RA through 18771 annotations produced 1 hits



olf413 (olf413):

Annotation Number : CG12673
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037153
Gbrowse : chr3L:22176864-22235907 (+) // 100.0 //
Probeset : 1624934_at
Accessions : protein= NP_730711;, nucleotide= NM_168948;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred f
FlyMine data for FBgn0037153.
Homophila reports that CG12673 is a close match (7e-49) to human gene DBH (NP_000778), a gene associated with Dopamine beta-hydroxylase deficiency, 223360 (3);Parkinson disease, resistance to, 168600 (3);[Dopamine-beta-hydroxylase activity levels, plasma] (3).
BioGrid reports that CG12673 interacts with CG4217 .
TRiP has 1 RNAi stocks for FBgn0037153 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037153 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 54 of 413.00Up
Head17 43 of 4 3.70Up
Eye16 14 of 4 3.52Up
Thoracicoabdominal ganglion47 44 of 410.40Up
Salivary gland9 30 of 4 2.02None
Crop21 20 of 4 4.70Up
Midgut2 00 of 4 0.50None
Tubule5 00 of 4 1.10None
Hindgut15 21 of 4 3.30Up
Heart1 00 of 4 0.35None
Fat body1 00 of 4 0.29None
Ovary1 00 of 4 0.30None
Testis3 00 of 4 0.70None
Male accessory glands2 00 of 4 0.50None
Virgin spermatheca1 00 of 4 0.36None
Mated spermatheca2 10 of 4 0.64None
Adult carcass1 00 of 4 0.40None
Larval CNS43 74 of 4 9.36Up
Larval Salivary gland5 20 of 4 1.08None
Larval midgut4 10 of 4 1.01None
Larval tubule6 12 of 4 1.30None
Larval hindgut3 10 of 4 0.72None
Larval fat body5 30 of 4 1.10None
Larval trachea7 40 of 4 1.73None
Larval carcass3 10 of 4 0.76None
S2 cells (growing)5 10 of 4 1.11None
Whole fly4 10 of 4

Looking for CG12673-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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