Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12678-RA through 18771 annotations produced 2 hits



shaking B (shakB):

Annotation Number : CG12678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085387
Gbrowse : chrX:20697010-20697373 (-) // 100.0 //
Probeset : 1626054_at
Accessions : protein= NP_001097038; /// NP_001138222; /// NP_523425; /// NP_608410; /// NP_728361;, nucleotide= NM_001103568; /// NM_001144750; /// NM_078701; /// NM_134566; /// NM_134566; /// NM_170660;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // non-traceable author st
Interpro : 0005243 // gap junction channel activity // inferred from mutant phenotype /// 0009881 // photoreceptor activity // infe
FlyMine data for FBgn0085387.
TRiP has 2 RNAi stocks for FBgn0085387 available for purchase.
VDRC has 3 RNAi stocks for FBgn0085387 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 30 of 4 1.00None
Head11 20 of 4 1.40None
Eye13 41 of 4 1.60None
Thoracicoabdominal ganglion15 40 of 4 1.80None
Salivary gland39 50 of 4 4.69Up
Crop10 20 of 4 1.30None
Midgut23 40 of 4 2.80Up
Tubule14 10 of 4 1.80Up
Hindgut13 20 of 4 1.60None
Heart2 00 of 4 0.27None
Fat body7 40 of 4 0.90None
Ovary6 10 of 4 0.70None
Testis7 20 of 4 0.90None
Male accessory glands26 60 of 4 3.20None
Virgin spermatheca17 50 of 4 2.08None
Mated spermatheca18 60 of 4 2.16None
Adult carcass22 50 of 4 2.70None
Larval CNS4 30 of 4 0.54None
Larval Salivary gland4 10 of 4 0.58None
Larval midgut12 40 of 4 1.47None
Larval tubule16 30 of 4 2.00None
Larval hindgut9 10 of 4 1.16None
Larval fat body12 50 of 4 1.50None
Larval trachea7 20 of 4 0.87None
Larval carcass10 20 of 4 1.21None
S2 cells (growing)7 10 of 4 0.86None
Whole fly8 20 of 4



shaking B (shakB):

Annotation Number : CG32508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085387
Gbrowse : chrX:20642288-20674656 (-) // 100.0 //
Probeset : 1639408_a_at
Accessions : protein= NP_001097038; /// NP_001138222; /// NP_523425; /// NP_608410; /// NP_728361;, nucleotide= NM_001103568; /// NM_001144750; /// NM_078701; /// NM_134566; /// NM_134566; /// NM_170660;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // non-traceable author st
Interpro : 0005243 // gap junction channel activity // inferred from mutant phenotype /// 0009881 // photoreceptor activity // infe
FlyMine data for FBgn0085387.
TRiP has 2 RNAi stocks for FBgn0085387 available for purchase.
VDRC has 3 RNAi stocks for FBgn0085387 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 64 of 416.80Up
Head15 23 of 4 1.60None
Eye278 384 of 430.02Up
Thoracicoabdominal ganglion136 184 of 414.80Up
Salivary gland18 40 of 4 1.98None
Crop75 94 of 4 8.20Up
Midgut4 01 of 4 0.50Down
Tubule2 00 of 4 0.30Down
Hindgut13 14 of 4 1.50None
Heart157 64 of 416.94Up
Fat body8 41 of 4 0.92None
Ovary2 01 of 4 0.30Down
Testis4 00 of 4 0.40Down
Male accessory glands13 11 of 4 1.40None
Virgin spermatheca6 11 of 4 0.70None
Mated spermatheca10 22 of 4 1.08None
Adult carcass11 01 of 4 1.20None
Larval CNS24 24 of 4 2.67Up
Larval Salivary gland4 00 of 4 0.43Down
Larval midgut3 10 of 4 0.38Down
Larval tubule3 10 of 4 0.40Down
Larval hindgut15 24 of 4 1.64None
Larval fat body5 10 of 4 0.60None
Larval trachea12 112 of 4 1.39None
Larval carcass15 14 of 4 1.72Up
S2 cells (growing)0 00 of 4 0.11Down
Whole fly9 11 of 4

Looking for CG12678-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime