FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12678-RA through 18771 annotations produced 2 hits

shaking B (shakB):

Annotation Number : CG32508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085387
Gbrowse : chrX:20642288-20674656 (-) // 100.0 //
Probeset : 1639408_a_at
Accessions : protein= NP_001097038; /// NP_001138222; /// NP_523425; /// NP_608410; /// NP_728361;, nucleotide= NM_001103568; /// NM_001144750; /// NM_078701; /// NM_134566; /// NM_134566; /// NM_170660;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // non-traceable author st
Interpro : 0005243 // gap junction channel activity // inferred from mutant phenotype /// 0009881 // photoreceptor activity // infe
FlyMine data for FBgn0085387.
TRiP has 2 RNAi stocks for FBgn0085387 available for purchase.
VDRC has 3 RNAi stocks for FBgn0085387 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	156 ± 6	4 of 4	16.80	Up
Head	15 ± 2	3 of 4	1.60	None
Eye	278 ± 38	4 of 4	30.02	Up
Thoracicoabdominal ganglion	136 ± 18	4 of 4	14.80	Up
Salivary gland	18 ± 4	0 of 4	1.98	None
Crop	75 ± 9	4 of 4	8.20	Up
Midgut	4 ± 0	1 of 4	0.50	Down
Tubule	2 ± 0	0 of 4	0.30	Down
Hindgut	13 ± 1	4 of 4	1.50	None
Heart	157 ± 6	4 of 4	16.94	Up
Fat body	8 ± 4	1 of 4	0.92	None
Ovary	2 ± 0	1 of 4	0.30	Down
Testis	4 ± 0	0 of 4	0.40	Down
Male accessory glands	13 ± 1	1 of 4	1.40	None
Virgin spermatheca	6 ± 1	1 of 4	0.70	None
Mated spermatheca	10 ± 2	2 of 4	1.08	None
Adult carcass	11 ± 0	1 of 4	1.20	None
Larval CNS	24 ± 2	4 of 4	2.67	Up
Larval Salivary gland	4 ± 0	0 of 4	0.43	Down
Larval midgut	3 ± 1	0 of 4	0.38	Down
Larval tubule	3 ± 1	0 of 4	0.40	Down
Larval hindgut	15 ± 2	4 of 4	1.64	None
Larval fat body	5 ± 1	0 of 4	0.60	None
Larval trachea	12 ± 11	2 of 4	1.39	None
Larval carcass	15 ± 1	4 of 4	1.72	Up
S2 cells (growing)	0 ± 0	0 of 4	0.11	Down
Whole fly	9 ± 1	1 of 4

shaking B (shakB):

Annotation Number : CG12678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085387
Gbrowse : chrX:20697010-20697373 (-) // 100.0 //
Probeset : 1626054_at
Accessions : protein= NP_001097038; /// NP_001138222; /// NP_523425; /// NP_608410; /// NP_728361;, nucleotide= NM_001103568; /// NM_001144750; /// NM_078701; /// NM_134566; /// NM_134566; /// NM_170660;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // non-traceable author st
Interpro : 0005243 // gap junction channel activity // inferred from mutant phenotype /// 0009881 // photoreceptor activity // infe
FlyMine data for FBgn0085387.
TRiP has 2 RNAi stocks for FBgn0085387 available for purchase.
VDRC has 3 RNAi stocks for FBgn0085387 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 3	0 of 4	1.00	None
Head	11 ± 2	0 of 4	1.40	None
Eye	13 ± 4	1 of 4	1.60	None
Thoracicoabdominal ganglion	15 ± 4	0 of 4	1.80	None
Salivary gland	39 ± 5	0 of 4	4.69	Up
Crop	10 ± 2	0 of 4	1.30	None
Midgut	23 ± 4	0 of 4	2.80	Up
Tubule	14 ± 1	0 of 4	1.80	Up
Hindgut	13 ± 2	0 of 4	1.60	None
Heart	2 ± 0	0 of 4	0.27	None
Fat body	7 ± 4	0 of 4	0.90	None
Ovary	6 ± 1	0 of 4	0.70	None
Testis	7 ± 2	0 of 4	0.90	None
Male accessory glands	26 ± 6	0 of 4	3.20	None
Virgin spermatheca	17 ± 5	0 of 4	2.08	None
Mated spermatheca	18 ± 6	0 of 4	2.16	None
Adult carcass	22 ± 5	0 of 4	2.70	None
Larval CNS	4 ± 3	0 of 4	0.54	None
Larval Salivary gland	4 ± 1	0 of 4	0.58	None
Larval midgut	12 ± 4	0 of 4	1.47	None
Larval tubule	16 ± 3	0 of 4	2.00	None
Larval hindgut	9 ± 1	0 of 4	1.16	None
Larval fat body	12 ± 5	0 of 4	1.50	None
Larval trachea	7 ± 2	0 of 4	0.87	None
Larval carcass	10 ± 2	0 of 4	1.21	None
S2 cells (growing)	7 ± 1	0 of 4	0.86	None
Whole fly	8 ± 2	0 of 4

Looking for CG12678-RA. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720