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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12697-RA through 18771 annotations produced 1 hits



Odorant receptor 13a (Or13a):

Annotation Number : CG12697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030715
Gbrowse : chrX:15868457-15870739 (+) // 100.0 //
Probeset : 1627819_at
Accessions : protein= NP_523359;, nucleotide= NM_078635;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0030715.
VDRC has 2 RNAi stocks for FBgn0030715 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 14 of 4 6.50Up
Head4 ± 11 of 4 1.60None
Eye3 ± 10 of 4 1.16None
Thoracicoabdominal ganglion10 ± 31 of 4 3.60None
Salivary gland7 ± 10 of 4 2.66None
Crop3 ± 10 of 4 1.20None
Midgut6 ± 10 of 4 2.20None
Tubule5 ± 00 of 4 2.00Up
Hindgut1 ± 00 of 4 0.50None
Heart3 ± 00 of 4 1.14None
Fat body11 ± 32 of 4 4.00Up
Ovary0 ± 00 of 4 0.10None
Testis5 ± 01 of 4 1.90None
Male accessory glands3 ± 10 of 4 1.40None
Virgin spermatheca9 ± 13 of 4 3.46Up
Mated spermatheca9 ± 11 of 4 3.34Up
Adult carcass6 ± 10 of 4 2.40None
Larval CNS6 ± 22 of 4 2.29None
Larval Salivary gland5 ± 21 of 4 1.86None
Larval midgut3 ± 20 of 4 1.22None
Larval tubule5 ± 10 of 4 2.10None
Larval hindgut1 ± 00 of 4 0.38None
Larval fat body3 ± 20 of 4 1.40None
Larval trachea2 ± 10 of 4 0.75None
Larval carcass3 ± 10 of 4 1.12None
S2 cells (growing)1 ± 00 of 4 0.68None
Whole fly2 ± 11 of 4

Looking for CG12697-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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