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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1271-RB through 18771 annotations produced 1 hits



(CG1271):

Annotation Number : CG1271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035392
Gbrowse : chr3L:3052513-3054907 (+) // 100.0 //
Probeset : 1623154_a_at
Accessions : protein= NP_647763; /// NP_728795; /// NP_728796; /// NP_995981;, nucleotide= NM_139506; /// NM_167973; /// NM_167974; /// NM_206259;
Interpro : "0004370 // glycerol kinase activity // inferred from sequence or structural similarity /// 0004370 // glycerol kinase a
FlyMine data for FBgn0035392.
Homophila reports that CG1271 is a close match (2e-27) to human gene GK (NP_000158), a gene associated with Glycerol kinase deficiency, 307030 (3).
BioGrid reports that CG1271 interacts with CG7483 CG3151 .
TRiP has 1 RNAi stocks for FBgn0035392 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 00 of 4 1.50Up
Head71 31 of 4 1.80Up
Eye78 64 of 4 1.97Up
Thoracicoabdominal ganglion61 40 of 4 1.60Up
Salivary gland33 30 of 4 0.83None
Crop44 20 of 4 1.10None
Midgut80 20 of 4 2.00Up
Tubule87 91 of 4 2.20Up
Hindgut49 10 of 4 1.20Up
Heart51 34 of 4 1.31Up
Fat body80 110 of 4 2.03Up
Ovary41 10 of 4 1.00None
Testis90 114 of 4 2.30Up
Male accessory glands26 10 of 4 0.70Down
Virgin spermatheca96 74 of 4 2.43Up
Mated spermatheca65 52 of 4 1.64Up
Adult carcass60 30 of 4 1.50Up
Larval CNS44 13 of 4 1.12Up
Larval Salivary gland44 50 of 4 1.12None
Larval midgut81 80 of 4 2.04Up
Larval tubule59 40 of 4 1.50Up
Larval hindgut26 20 of 4 0.68Down
Larval fat body70 20 of 4 1.80Up
Larval trachea30 44 of 4 0.78Down
Larval carcass29 50 of 4 0.74None
S2 cells (growing)17 00 of 4 0.44Down
Whole fly39 10 of 4

Looking for CG1271-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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