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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12717-RA through 18771 annotations produced 1 hits



(CG12717):

Annotation Number : CG12717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030420
Gbrowse : chrX:12655330-12657638 (-) // 100.0 //
Probeset : 1623493_at
Accessions : protein= NP_572827;, nucleotide= NM_132599;
Interpro : 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity //
FlyMine data for FBgn0030420.
VDRC has 3 RNAi stocks for FBgn0030420 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 24 of 4 1.20Up
Head19 24 of 4 0.50Down
Eye10 13 of 4 0.27Down
Thoracicoabdominal ganglion30 34 of 4 0.70None
Salivary gland17 22 of 4 0.43Down
Crop23 14 of 4 0.60Down
Midgut13 00 of 4 0.30Down
Tubule16 03 of 4 0.40Down
Hindgut16 24 of 4 0.40Down
Heart5 21 of 4 0.12Down
Fat body8 32 of 4 0.21Down
Ovary100 24 of 4 2.50Up
Testis12 14 of 4 0.30Down
Male accessory glands22 34 of 4 0.60Down
Virgin spermatheca9 04 of 4 0.24Down
Mated spermatheca10 23 of 4 0.25Down
Adult carcass14 23 of 4 0.40Down
Larval CNS28 24 of 4 0.71Down
Larval Salivary gland13 14 of 4 0.34Down
Larval midgut6 10 of 4 0.17Down
Larval tubule15 14 of 4 0.40Down
Larval hindgut14 04 of 4 0.36Down
Larval fat body15 14 of 4 0.40Down
Larval trachea10 33 of 4 0.26Down
Larval carcass8 03 of 4 0.20Down
S2 cells (growing)62 24 of 4 1.56Up
Whole fly40 24 of 4

Looking for CG12717-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime