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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12729-RA through 18771 annotations produced 1 hits


(CG12729):

Annotation Number : CG12729
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029816
Gbrowse : chrX:5739312-5740139 (+) // 100.0 //
Probeset : 1625900_at
Accessions : protein= NP_572271;, nucleotide= NM_132043;
FlyMine data for FBgn0029816.
BDGP gene expression has embryonic in situ data for CG12729: 4 pix of staining in 1 body parts.
BioGrid reports that CG12729 interacts with CG5681 .
VDRC has 1 RNAi stocks for FBgn0029816 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head4 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.09Down
Crop2 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.07Down
Fat body5 ± 20 of 4 0.15Down
Ovary0 ± 00 of 4 0.00Down
Testis459 ± 284 of 411.50Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.07Down
Mated spermatheca2 ± 00 of 4 0.07Down
Adult carcass7 ± 30 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland4 ± 10 of 4 0.11Down
Larval midgut3 ± 10 of 4 0.09Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut1 ± 10 of 4 0.04Down
Larval fat body30 ± 102 of 4 0.80None
Larval trachea2 ± 40 of 4 0.07Down
Larval carcass6 ± 10 of 4 0.17Down
S2 cells (growing)2 ± 00 of 4 0.07Down
Whole fly39 ± 41 of 4

Looking for CG12729-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime