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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1273-RB through 18771 annotations produced 1 hits



(CG1273):

Annotation Number : CG1273
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035522
Gbrowse : chr3L:4263720-4277782 (+) // 100.0 //
Probeset : 1635514_at
Accessions : protein= NP_647883;, nucleotide= NM_139626;
FlyMine data for FBgn0035522.
BDGP gene expression has embryonic in situ data for CG1273: 38 pix of staining in 28 body parts.
BioGrid reports that CG1273 interacts with CG13287 .
VDRC has 1 RNAi stocks for FBgn0035522 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.30Down
Head5 10 of 4 0.50None
Eye3 11 of 4 0.28Down
Thoracicoabdominal ganglion6 10 of 4 0.50None
Salivary gland15 50 of 4 1.23None
Crop8 10 of 4 0.70None
Midgut5 10 of 4 0.40Down
Tubule5 00 of 4 0.50Down
Hindgut13 13 of 4 1.10None
Heart3 10 of 4 0.27Down
Fat body9 50 of 4 0.77None
Ovary3 10 of 4 0.20Down
Testis5 13 of 4 0.40Down
Male accessory glands8 10 of 4 0.70None
Virgin spermatheca2 10 of 4 0.23Down
Mated spermatheca4 10 of 4 0.32Down
Adult carcass10 50 of 4 0.80None
Larval CNS10 32 of 4 0.81None
Larval Salivary gland7 10 of 4 0.58None
Larval midgut16 31 of 4 1.32None
Larval tubule9 21 of 4 0.80None
Larval hindgut88 134 of 4 7.06Up
Larval fat body7 20 of 4 0.60None
Larval trachea16 14 of 4 1.33None
Larval carcass17 21 of 4 1.39None
S2 cells (growing)5 10 of 4 0.44Down
Whole fly12 21 of 4

Looking for CG1273-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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