FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12736-RA through 18771 annotations produced 1 hits

chr2R:3396031-3397959 (-) // 100.0 // ():

Annotation Number : CG12736
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634444_at
Accessions : protein= , nucleotide= NP_610288;
Pathway : 0006412 // translation // inferred from sequence or structural similarity /// 0006414 // translational elongation // inf
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence o
FlyMine data for full length.
Homophila reports that CG12736 is a close match (3e-109) to human gene COXPD4;EFTU;TUFM (NP_003312), a gene associated with Combined oxidative phosphorylation deficiency 4, 610678 (3).
BioGrid reports that CG12736 interacts with CG6412 CG33017 CG8264 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	111 ± 4	4 of 4	0.70	Down
Head	107 ± 4	4 of 4	0.70	Down
Eye	170 ± 10	4 of 4	1.11	None
Thoracicoabdominal ganglion	129 ± 13	4 of 4	0.80	None
Salivary gland	67 ± 7	4 of 4	0.44	Down
Crop	185 ± 6	4 of 4	1.20	Up
Midgut	82 ± 8	4 of 4	0.50	Down
Tubule	178 ± 2	4 of 4	1.20	Up
Hindgut	170 ± 6	4 of 4	1.10	None
Heart	216 ± 5	4 of 4	1.40	Up
Fat body	106 ± 7	4 of 4	0.69	Down
Ovary	136 ± 2	4 of 4	0.90	None
Testis	741 ± 25	4 of 4	4.80	Up
Male accessory glands	91 ± 10	4 of 4	0.60	Down
Virgin spermatheca	98 ± 2	4 of 4	0.64	Down
Mated spermatheca	99 ± 4	4 of 4	0.64	Down
Adult carcass	126 ± 6	4 of 4	0.80	Down
Larval CNS	119 ± 5	4 of 4	0.78	Down
Larval Salivary gland	67 ± 3	4 of 4	0.44	Down
Larval midgut	89 ± 9	4 of 4	0.58	Down
Larval tubule	89 ± 2	4 of 4	0.60	Down
Larval hindgut	200 ± 18	4 of 4	1.30	None
Larval fat body	127 ± 18	4 of 4	0.80	None
Larval trachea	224 ± 5	4 of 4	1.45	Up
Larval carcass	165 ± 14	4 of 4	1.07	None
S2 cells (growing)	176 ± 7	4 of 4	1.15	None
Whole fly	154 ± 8	4 of 4

Looking for CG12736-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720