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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1274-RA through 18771 annotations produced 1 hits



jafrac2 (Jafrac2):

Annotation Number : CG1274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040308
Gbrowse : chr3L:3042374-3044181 (+) // 100.0 //
Probeset : 1637814_s_at
Accessions : protein= NP_525002; /// NP_728793;, nucleotide= NM_080263; /// NM_167971;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // non-traceable autho
Interpro : 0004601 // peroxidase activity // non-traceable author statement /// 0004601 // peroxidase activity // inferred from ele
FlyMine data for FBgn0040308.
BDGP gene expression has embryonic in situ data for Jafrac2: 29 pix of staining in 15 body parts.
BioGrid reports that CG1274 interacts with CG15087 CG9306 CG2371 CG12284 .
VDRC has 3 RNAi stocks for FBgn0040308 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 24 of 4 0.20Down
Head101 44 of 4 0.40Down
Eye67 24 of 4 0.27Down
Thoracicoabdominal ganglion58 14 of 4 0.20Down
Salivary gland149 94 of 4 0.61Down
Crop38 04 of 4 0.20Down
Midgut554 104 of 4 2.30Up
Tubule79 44 of 4 0.30Down
Hindgut86 44 of 4 0.40Down
Heart254 94 of 4 1.04None
Fat body160 104 of 4 0.66Down
Ovary235 34 of 4 1.00None
Testis975 294 of 4 4.00Up
Male accessory glands1277 1624 of 4 5.20Up
Virgin spermatheca235 34 of 4 0.96None
Mated spermatheca220 254 of 4 0.90None
Adult carcass99 54 of 4 0.40Down
Larval CNS307 164 of 4 1.26Up
Larval Salivary gland1040 784 of 4 4.25Up
Larval midgut451 324 of 4 1.84Up
Larval tubule82 44 of 4 0.30Down
Larval hindgut181 34 of 4 0.74Down
Larval fat body139 384 of 4 0.60None
Larval trachea372 574 of 4 1.52Up
Larval carcass180 74 of 4 0.73Down
S2 cells (growing)715 174 of 4 2.92Up
Whole fly245 104 of 4

Looking for CG1274-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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