Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12740-RB through 18771 annotations produced 1 hits



Ribosomal protein L28 (RpL28):

Annotation Number : CG12740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035422
Gbrowse : chr3L:3220909-3222958 (-) // 100.0 //
Probeset : 1625991_s_at
Accessions : protein= NP_001163336; /// NP_001163337; /// NP_647791; /// NP_728839; /// NP_728840; /// NP_728841;, nucleotide= NM_001169865; /// NM_001169866; /// NM_139534; /// NM_168004; /// NM_168005; /// NM_168006;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0035422.
BioGrid reports that CG12740 interacts with CG5061 CG3335 CG9610 .
TRiP has 1 RNAi stocks for FBgn0035422 available for purchase.
VDRC has 5 RNAi stocks for FBgn0035422 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2738 294 of 4 0.80Down
Head3922 1204 of 4 1.20Up
Eye6010 994 of 4 1.81Up
Thoracicoabdominal ganglion3727 1014 of 4 1.10None
Salivary gland8836 1574 of 4 2.66Up
Crop5634 2884 of 4 1.70Up
Midgut4870 1404 of 4 1.50Up
Tubule1926 324 of 4 0.60Down
Hindgut4467 1064 of 4 1.30Up
Heart5888 3264 of 4 1.77Up
Fat body4669 6904 of 4 1.41Up
Ovary2745 384 of 4 0.80Down
Testis699 714 of 4 0.20Down
Male accessory glands7975 1964 of 4 2.40Up
Virgin spermatheca2253 1064 of 4 0.68Down
Mated spermatheca2221 1344 of 4 0.67Down
Adult carcass5169 1374 of 4 1.60Up
Larval CNS2202 2464 of 4 0.66Down
Larval Salivary gland7522 4374 of 4 2.27Up
Larval midgut4253 484 of 4 1.28Up
Larval tubule4751 1184 of 4 1.40Up
Larval hindgut3699 554 of 4 1.11None
Larval fat body7398 8344 of 4 2.20Up
Larval trachea5690 2184 of 4 1.71Up
Larval carcass4247 3324 of 4 1.28None
S2 cells (growing)4220 1574 of 4 1.27Up
Whole fly3318 1554 of 4

Looking for CG12740-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime