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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12744-RA through 18771 annotations produced 1 hits



(CG12744):

Annotation Number : CG12744
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033459
Gbrowse : chr2R:5762788-5763750 (+) // 100.0 //
Probeset : 1627826_s_at
Accessions : protein= NP_610530; /// NP_724850;, nucleotide= NM_136686; /// NM_165717;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0033459.
BDGP gene expression has embryonic in situ data for CG12744: 22 pix of staining in 6 body parts.
BioGrid reports that CG12744 interacts with CG18627 CG3151 .
VDRC has 3 RNAi stocks for FBgn0033459 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 10 of 4 0.10Down
Head12 ± 10 of 4 0.10Down
Eye4 ± 20 of 4 0.03Down
Thoracicoabdominal ganglion13 ± 30 of 4 0.10Down
Salivary gland15 ± 30 of 4 0.11Down
Crop12 ± 20 of 4 0.10Down
Midgut19 ± 00 of 4 0.10Down
Tubule16 ± 10 of 4 0.10Down
Hindgut16 ± 30 of 4 0.10Down
Heart16 ± 30 of 4 0.12Down
Fat body13 ± 80 of 4 0.09Down
Ovary259 ± 94 of 4 1.80Up
Testis70 ± 44 of 4 0.50Down
Male accessory glands8 ± 20 of 4 0.10Down
Virgin spermatheca14 ± 10 of 4 0.10Down
Mated spermatheca10 ± 20 of 4 0.07Down
Adult carcass21 ± 70 of 4 0.10Down
Larval CNS39 ± 14 of 4 0.28Down
Larval Salivary gland8 ± 00 of 4 0.06Down
Larval midgut15 ± 00 of 4 0.11Down
Larval tubule19 ± 11 of 4 0.10Down
Larval hindgut14 ± 11 of 4 0.10Down
Larval fat body186 ± 134 of 4 1.30Up
Larval trachea32 ± 34 of 4 0.23Down
Larval carcass19 ± 22 of 4 0.14Down
S2 cells (growing)57 ± 34 of 4 0.41Down
Whole fly140 ± 84 of 4

Looking for CG12744-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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