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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12755-RA through 18771 annotations produced 1 hits



lethal(3)malignant blood neoplasm-1 (l(3)mbn):

Annotation Number : CG12755
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002440
Gbrowse : chr3L:6116985-6122533 (-) // 100.0 //
Probeset : 1633919_s_at
Accessions : protein= NP_001014570; /// NP_729143;, nucleotide= NM_001014570; /// NM_168157;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0002440.
BDGP gene expression has embryonic in situ data for l(3)mbn: 4 pix of staining in 1 body parts.
BioGrid reports that CG12755 interacts with CG31770 .
TRiP has 1 RNAi stocks for FBgn0002440 available for purchase.
VDRC has 3 RNAi stocks for FBgn0002440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 2.50None
Head4 10 of 4 2.50None
Eye5 00 of 4 2.97Up
Thoracicoabdominal ganglion0 00 of 4 0.50None
Salivary gland9 40 of 4 5.19None
Crop20 13 of 411.20Up
Midgut5 30 of 4 2.80None
Tubule4 00 of 4 2.20Up
Hindgut5 10 of 4 2.80None
Heart4 10 of 4 2.45None
Fat body5 40 of 4 2.69None
Ovary2 10 of 4 1.10None
Testis5 00 of 4 3.10Up
Male accessory glands3 10 of 4 1.60None
Virgin spermatheca3 10 of 4 1.92None
Mated spermatheca2 00 of 4 1.23None
Adult carcass1 00 of 4 0.90None
Larval CNS3 10 of 4 1.88None
Larval Salivary gland5 20 of 4 2.84None
Larval midgut5 20 of 4 2.76None
Larval tubule3 00 of 4 1.60None
Larval hindgut49 84 of 426.51Up
Larval fat body1 00 of 4 0.70None
Larval trachea103 394 of 455.69Up
Larval carcass2087 1554 of 41128.47Up
S2 cells (growing)2 00 of 4 1.34None
Whole fly1 10 of 4

Looking for CG12755-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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