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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1276-RA through 18771 annotations produced 1 hits



Transcription factor IIEbeta (TfIIEbeta):

Annotation Number : CG1276
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015829
Gbrowse : chr3L:4287037-4288352 (+) // 100.0 //
Probeset : 1634616_at
Accessions : protein= NP_001163346; /// NP_523923;, nucleotide= NM_001169875; /// NM_079199;
Pathway : 0005673 // transcription factor TFIIE complex // inferred from sequence or structural similarity /// 0005673 // transcri
Interpro : 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein
FlyMine data for FBgn0015829.
VDRC has 2 RNAi stocks for FBgn0015829 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 54 of 4 1.40Up
Head119 34 of 4 1.10Up
Eye275 184 of 4 2.63Up
Thoracicoabdominal ganglion154 64 of 4 1.50Up
Salivary gland122 44 of 4 1.17Up
Crop118 44 of 4 1.10None
Midgut92 34 of 4 0.90Down
Tubule78 24 of 4 0.80Down
Hindgut97 44 of 4 0.90None
Heart111 54 of 4 1.06None
Fat body100 104 of 4 0.96None
Ovary151 24 of 4 1.40Up
Testis173 74 of 4 1.70Up
Male accessory glands110 34 of 4 1.10None
Virgin spermatheca144 34 of 4 1.38Up
Mated spermatheca136 64 of 4 1.31Up
Adult carcass87 34 of 4 0.80Down
Larval CNS187 124 of 4 1.79Up
Larval Salivary gland123 24 of 4 1.18Up
Larval midgut54 54 of 4 0.52Down
Larval tubule119 04 of 4 1.10Up
Larval hindgut69 34 of 4 0.67Down
Larval fat body180 84 of 4 1.70Up
Larval trachea103 54 of 4 0.99None
Larval carcass62 74 of 4 0.59Down
S2 cells (growing)134 14 of 4 1.29Up
Whole fly104 24 of 4

Looking for CG1276-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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