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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12769-RB through 18771 annotations produced 1 hits



(CG12769):

Annotation Number : CG12769
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033252
Gbrowse : chr2R:3941330-3953056 (-) // 100.0 //
Probeset : 1624696_a_at
Accessions : protein= NP_610347; /// NP_724641;, nucleotide= NM_136503; /// NM_165585;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033252.
Homophila reports that CG12769 is a close match (9e-11) to human gene MRX89;ZNF41 (NP_700359), a gene associated with Mental retardation, X-linked-89 (3).
TRiP has 1 RNAi stocks for FBgn0033252 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033252 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 04 of 4 8.00Up
Head7 00 of 4 2.40None
Eye1 00 of 4 0.42None
Thoracicoabdominal ganglion13 23 of 4 4.20Up
Salivary gland3 10 of 4 1.15None
Crop5 10 of 4 1.80None
Midgut1 00 of 4 0.50None
Tubule2 00 of 4 0.90None
Hindgut2 10 of 4 0.90None
Heart0 00 of 4 0.11None
Fat body2 10 of 4 0.64None
Ovary4 11 of 4 1.40None
Testis2 00 of 4 0.70None
Male accessory glands4 20 of 4 1.40None
Virgin spermatheca1 00 of 4 0.41None
Mated spermatheca1 00 of 4 0.46None
Adult carcass7 10 of 4 2.30None
Larval CNS2 10 of 4 0.70None
Larval Salivary gland1 10 of 4 0.57None
Larval midgut1 10 of 4 0.59None
Larval tubule3 10 of 4 1.10None
Larval hindgut2 00 of 4 0.79None
Larval fat body5 11 of 4 1.80None
Larval trachea1 20 of 4 0.52None
Larval carcass1 00 of 4 0.53None
S2 cells (growing)1 00 of 4 0.54None
Whole fly3 11 of 4

Looking for CG12769-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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