Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12780-RA through 18771 annotations produced 1 hits


/// (CG12780 /// DsimCG12780):

Annotation Number : CG12780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033301
Gbrowse : chr2R:4439455-4439758 (-) // 100.0 //
Probeset : 1623018_at
Accessions : protein= NP_610388;, nucleotide= NM_136544;
Interpro : 0051636 // Gram-negative bacterial cell surface binding // inferred from sequence or structural similarity
FlyMine data for FBgn0033301.
VDRC has 2 RNAi stocks for FBgn0033301 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 10 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.03Down
Crop2 ± 00 of 4 0.00Down
Midgut1194 ± 604 of 4 9.20Up
Tubule139 ± 264 of 4 1.10None
Hindgut602 ± 144 of 4 4.60Up
Heart3 ± 10 of 4 0.02Down
Fat body4 ± 10 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis76 ± 74 of 4 0.60Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca2 ± 00 of 4 0.02Down
Adult carcass1 ± 10 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.02Down
Larval midgut311 ± 304 of 4 2.39Up
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut34 ± 74 of 4 0.27Down
Larval fat body8 ± 51 of 4 0.10Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly130 ± 134 of 4

Looking for CG12780-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime