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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12784-RA through 18771 annotations produced 1 hits


(CG12784):

Annotation Number : CG12784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038356
Gbrowse : chr3R:11588836-11589286 (+) // 100.0 //
Probeset : 1633652_at
Accessions : protein= NP_650484;, nucleotide= NM_142227;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038356.
BioGrid reports that CG12784 interacts with CG5185 CG15218 .
VDRC has 3 RNAi stocks for FBgn0038356 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland13 ± 30 of 4 0.20Down
Crop5 ± 00 of 4 0.10Down
Midgut4 ± 20 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart4 ± 11 of 4 0.07Down
Fat body7 ± 23 of 4 0.11Down
Ovary1 ± 00 of 4 0.00Down
Testis844 ± 474 of 412.40Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 00 of 4 0.06Down
Mated spermatheca5 ± 00 of 4 0.08Down
Adult carcass9 ± 21 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.07Down
Larval Salivary gland7 ± 10 of 4 0.10Down
Larval midgut6 ± 10 of 4 0.09Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.05Down
Larval fat body99 ± 454 of 4 1.50None
Larval trachea8 ± 61 of 4 0.12Down
Larval carcass5 ± 00 of 4 0.09Down
S2 cells (growing)3 ± 00 of 4 0.04Down
Whole fly68 ± 64 of 4

Looking for CG12784-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime