FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12787-RC through 18771 annotations produced 1 hits

hoepel (hoe1):

Annotation Number : CG12787
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041150
Gbrowse : chr2L:4908744-4932296 (-) // 100.0 //
Probeset : 1627509_s_at
Accessions : protein= NP_608875; /// NP_608876; /// NP_723024; /// NP_787980; /// NP_787981; /// NP_787982;, nucleotide= NM_135031; /// NM_135032; /// NM_164603; /// NM_175966; /// NM_175967; /// NM_175968;
Pathway : 0016020 // membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic an
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005302 // L-tyrosine transmembra
FlyMine data for FBgn0041150.
BDGP gene expression has embryonic in situ data for hoe1: 2 pix of staining in 1 body parts.
Homophila reports that CG12787 is a close match (9e-112) to human gene BOCA;D15S12;EYCL3;HCL3;OCA2;P;PED;SHEP1 (NP_000266), a gene associated with Albinism, brown oculocutaneous, 203200 (3);Albinism, oculocutaneous, type II, 203200 (3);[Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
BioGrid reports that CG12787 interacts with CG32086 CG9842 CG13168 CG14183 CG1455 CG15631 CG8840 .
TRiP has 2 RNAi stocks for FBgn0041150 available for purchase.
VDRC has 2 RNAi stocks for FBgn0041150 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1027 ± 18	4 of 4	3.20	Up
Head	795 ± 5	4 of 4	2.50	Up
Eye	1038 ± 10	4 of 4	3.24	Up
Thoracicoabdominal ganglion	2139 ± 70	4 of 4	6.70	Up
Salivary gland	20 ± 4	0 of 4	0.06	Down
Crop	130 ± 3	4 of 4	0.40	Down
Midgut	23 ± 1	4 of 4	0.10	Down
Tubule	10 ± 3	0 of 4	0.00	Down
Hindgut	168 ± 7	4 of 4	0.50	Down
Heart	56 ± 4	4 of 4	0.18	Down
Fat body	22 ± 4	4 of 4	0.07	Down
Ovary	440 ± 12	4 of 4	1.40	Up
Testis	196 ± 8	4 of 4	0.60	Down
Male accessory glands	33 ± 2	4 of 4	0.10	Down
Virgin spermatheca	1000 ± 6	4 of 4	3.12	Up
Mated spermatheca	1005 ± 87	4 of 4	3.14	Up
Adult carcass	317 ± 14	4 of 4	1.00	None
Larval CNS	395 ± 51	4 of 4	1.23	None
Larval Salivary gland	14 ± 2	1 of 4	0.05	Down
Larval midgut	9 ± 2	2 of 4	0.03	Down
Larval tubule	8 ± 2	2 of 4	0.00	Down
Larval hindgut	48 ± 2	4 of 4	0.15	Down
Larval fat body	38 ± 4	3 of 4	0.10	Down
Larval trachea	31 ± 22	4 of 4	0.10	Down
Larval carcass	60 ± 5	4 of 4	0.19	Down
S2 cells (growing)	56 ± 1	4 of 4	0.18	Down
Whole fly	320 ± 17	4 of 4

Looking for CG12787-RC. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720