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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12789-RA through 18771 annotations produced 1 hits



CG12789 (santa-maria):

Annotation Number : CG12789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025697
Gbrowse : chr2L:7445353-7451165 (-) // 100.0 //
Probeset : 1635522_a_at
Accessions : protein= NP_609121; /// NP_723277;, nucleotide= NM_135277; /// NM_164752;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferr
FlyMine data for FBgn0025697.
BDGP gene expression has embryonic in situ data for BEST:CK01577: 25 pix of staining in 6 body parts.
Homophila reports that CG12789 is a close match (3e-43) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
BioGrid reports that CG12789 interacts with CG3953 .
TRiP has 2 RNAi stocks for FBgn0025697 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain525 174 of 4 5.30Up
Head833 264 of 4 8.30Up
Eye1593 784 of 415.95Up
Thoracicoabdominal ganglion677 244 of 4 6.80Up
Salivary gland14 61 of 4 0.14Down
Crop17 14 of 4 0.20Down
Midgut296 104 of 4 3.00Up
Tubule11 21 of 4 0.10Down
Hindgut31 34 of 4 0.30Down
Heart334 214 of 4 3.35Up
Fat body391 264 of 4 3.92Up
Ovary5 12 of 4 0.10Down
Testis59 24 of 4 0.60Down
Male accessory glands23 14 of 4 0.20Down
Virgin spermatheca369 54 of 4 3.69Up
Mated spermatheca375 224 of 4 3.76Up
Adult carcass291 134 of 4 2.90Up
Larval CNS337 444 of 4 3.38Up
Larval Salivary gland11 11 of 4 0.11Down
Larval midgut238 74 of 4 2.38Up
Larval tubule36 14 of 4 0.40Down
Larval hindgut8 12 of 4 0.09Down
Larval fat body2301 3834 of 423.00Up
Larval trachea23 402 of 4 0.24Down
Larval carcass33 94 of 4 0.34Down
S2 cells (growing)3 00 of 4 0.03Down
Whole fly99 34 of 4

Looking for CG12789-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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